rs211887638 SNP Detail

Summary

• ID
  rs211887638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98659996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGTAGGT TCTCCATAAA
  AGGTATGTTG AATTGAACTG CGTGTGCCTC CTCCAGGGTC AGGGGAGAGC TTGGCTCACC
  TGCAGAGACA AGCACCACCG CGGTGAATAG GCCCAGCTCC TCCTCGGTAA GTGCCAGGGA
  GTTGAGCTTC TCGCTGAAGT CAAACATGGC ATTGAGCAGG TCGCCCATGC CCATGGCACC
  R
  AGCTCCTGCA GACTGTAGGT TGTGCGGCTC AGGAACATCA CTGTCTGGTC CTTCACGTTG
  AACAACGATG CAAAGCGCAC CATCAGCACC TGAAGGGAGG GTGGACATTT TTTGAGTGAG
  ATGGGAGGGG CATTTTGCCA AATGACCCCT AGAGCCTGCT AATAACTTTG AGGGGTGTTT
  CCTTAGATTG TCAGTAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323827337	CHEV_11_98630484	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211887638					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98659996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	442 bp distal
Gm57390	predicted gene, 57390	1423 bp downstream
Nr1d1	nuclear receptor subfamily 1, group D, member 1	within coordinates
Rr456272	regulatory region 456272	1547 bp proximal
Thra	thyroid hormone receptor alpha	164 bp downstream
Tssr110587	transcription start site region 110587	933 bp upstream
Tssr110588	transcription start site region 110588	1147 bp downstream