rs211907597 SNP Detail

Summary

• ID
  rs211907597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88888738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGTACA TAATATAAAT
  AAATCTTTTT TTAAAAAATA CTGTATGTGC ACATATAAGA GAGAAAACAT TTGTTAAATT
  TGGGAGTCCC CAAATCCCAA GTGAGTAAAA ATTTCTCTTT TTTTTTTTTT CAGTATTGAA
  AATTGCTAGG CAAAGGACTT TACCACCAAG CTATATTCCC AGACCCTTAT TACTTAAGTG
  R
  GGGTAGGGTG GGTTCTATGT AGCCCAGGCT GGCCTTGAAT TTGAGTTCCT CCTGCTTCAG
  TCTCCCCAGA GAGAGTTCTG GGATAATAGG TGTGTCCCAC CTCACCCAAT TTAAAAGTAT
  TATAACCAAT CTGGCTTAGA TGAAGAAATT CTTAAGAGAC ACTTGTGTCT CAATCTGTTA
  CATTATTGAA ACAGTGAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783676	CHEV_11_88859226	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211907597					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88888738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	1185 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr402858	regulatory region 402858	1353 bp upstream
Rr454272	regulatory region 454272	1329 bp distal
Rr454273	regulatory region 454273	986 bp distal
Rr454274	regulatory region 454274	410 bp distal
Rr454275	regulatory region 454275	628 bp proximal
Rr454276	regulatory region 454276	1400 bp proximal
Rr454277	regulatory region 454277	1996 bp proximal
Trim25	tripartite motif-containing 25	1464 bp upstream
Tssr104062	transcription start site region 104062	1473 bp upstream
Tssr104063	transcription start site region 104063	1530 bp upstream
Tssr110061	transcription start site region 110061	1379 bp upstream