rs211913831 SNP Detail

Summary

• ID
  rs211913831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164586165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAAGGG TTGCAGCTTG
  GTCCCTGTGG ACCACATATG CCACTCTTAG ACAAAATGAA AGATAGTCAT CAAAATTAGA
  GAGGGCAGCT GCGATGACTC GGTCTTTCAT GTCTCCTCTG TCACCTTCTC CCCTGCTTCT
  TTTTATTTGT ATAGCACATG TCCTCCATTG GCTGTGATAT CTAATAGTGT CCAGTGACAC
  Y
  GCTGAGCCCA GTAAGGTTAA GGGCAGAGTA CAGGTAAAAA CGTAACAACA AAAGACTATC
  TTCATATATC CAAAGCCAGG CATGGTAGTG TCTGCTTGCC ATTCCAGTCT TGGGAAGGCA
  GAGAGAGACA GGTAGATTAC ACTGTCAGCT TGGGCCTAAA TTGAAGCTCA GCCTAGAGCT
  ACAGAGGAGG GTCTTGCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356440049	MGP_WTSI_2_164569745	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211913831					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356440049	MGP_WTSI_2_164569745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164586165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	1332 bp proximal
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	1770 bp upstream
Tssr21635	transcription start site region 21635	1734 bp upstream
Tssr21636	transcription start site region 21636	1783 bp upstream
Tssr27522	transcription start site region 27522	1137 bp upstream
Tssr27523	transcription start site region 27523	1121 bp upstream
Tssr27524	transcription start site region 27524	1098 bp upstream
Tssr27525	transcription start site region 27525	1064 bp upstream
Tssr27526	transcription start site region 27526	1034 bp upstream
Tssr27527	transcription start site region 27527	1651 bp downstream
Tssr27528	transcription start site region 27528	1671 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates