rs211915270 SNP Detail

Summary

• ID
  rs211915270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54800107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGAGAA AGGAGATGTG
  AACGGGGAGA AAGAGCAGAA ATTCTACACT TTCCTGAAGG TGAGAGTGGG TAATATGGAG
  GAAGCTCCCC TTAGCGGCTT AGGCCCTGGC CCACAGGAAT GTCTTGGCAT TGGTCTAGTA
  GACCCATGAG AGGGCTTGGC AGACCCAGTC CTATCACCCT ACTGCAGACG TAAGACAGGG
  Y
  CCACAGCCTT CCAGTCAGCA TAGAGATGGA CGGACAGTCA AGTGTTCTTG TTCCCGAACT
  GGGCCCTTCC CTCAGTGCCA GTTTTCTCCC TGGAAGGGAG GGGAGGTCAG GAGGAGCCTC
  AAGTCAGACT AACGCCCCTC TCACCCCTGC TCCAGAACTC CTGCCCTCCC ACTGCAGAAC
  TCCTGGGCTC ACCTGGCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428909	MGP_WTSI_11_54722783	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211915270					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428909	MGP_WTSI_11_54722783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54800107 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	1504 bp downstream
Tssr3502	transcription start site region 3502	360 bp downstream
Tssr3503	transcription start site region 3503	834 bp upstream
Tssr101561	transcription start site region 101561	724 bp downstream
Tssr101562	transcription start site region 101562	677 bp downstream
Tssr101563	transcription start site region 101563	665 bp downstream
Tssr101564	transcription start site region 101564	644 bp downstream
Tssr101565	transcription start site region 101565	214 bp downstream
Tssr101566	transcription start site region 101566	168 bp downstream
Tssr101567	transcription start site region 101567	182 bp upstream
Tssr101568	transcription start site region 101568	258 bp upstream
Tssr101569	transcription start site region 101569	341 bp upstream
Tssr101570	transcription start site region 101570	363 bp upstream
Tssr101571	transcription start site region 101571	417 bp upstream
Tssr101572	transcription start site region 101572	512 bp upstream
Tssr101573	transcription start site region 101573	549 bp upstream
Tssr101574	transcription start site region 101574	563 bp upstream
Tssr101575	transcription start site region 101575	611 bp upstream
Tssr101576	transcription start site region 101576	625 bp upstream
Tssr101577	transcription start site region 101577	654 bp upstream
Tssr101578	transcription start site region 101578	737 bp upstream
Tssr108006	transcription start site region 108006	1996 bp upstream
Tssr108007	transcription start site region 108007	707 bp upstream
Tssr108008	transcription start site region 108008	646 bp upstream
Tssr108009	transcription start site region 108009	630 bp upstream
Tssr108010	transcription start site region 108010	210 bp upstream
Tssr108011	transcription start site region 108011	376 bp downstream
Tssr108012	transcription start site region 108012	410 bp downstream
Tssr108013	transcription start site region 108013	504 bp downstream
Tssr108014	transcription start site region 108014	511 bp downstream
Tssr108015	transcription start site region 108015	594 bp downstream
Tssr108016	transcription start site region 108016	646 bp downstream
Tssr108017	transcription start site region 108017	697 bp downstream
Tssr108018	transcription start site region 108018	712 bp downstream
Tssr108019	transcription start site region 108019	748 bp downstream
Tssr108020	transcription start site region 108020	804 bp downstream
Tssr108021	transcription start site region 108021	824 bp downstream
Tssr108022	transcription start site region 108022	835 bp downstream
Tssr108023	transcription start site region 108023	1088 bp downstream