rs211921247 SNP Detail

Summary

• ID
  rs211921247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:153567130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGGCGCA CTCCGGGTCT
  GTCGCCGGCC GCGAGGGTCC GAGGAGCGGG GCTTCGTCCT CCGGGGCGAC GAGTAGCGAA
  GCGGGCGGCT CCGCAAGCCG TGCGAGGATC TAGCCTGCAG CCGGAGCTGC GAGGCTGTGA
  TCGGTGTTGC CCGGGGGTTG AGAAGATCGC CCCTCTGGCC CACGCGGGTC GCCTCCACGC
  R
  CCGCCGGGTC GAGGGGCCTC TGTCCCAGGT TCTGACACCG ATCAAGTTGC TGGAGAGCTC
  CGTCTAAGCG CTCGCTCTGC AGACAGCCGC GGCCCGGAGA CTGCCAGAAG GCGGGCAGGG
  GAGGCGCGGG GCGAAGAAGC GTGGAGCGCG GGGCGTGGGG ACGCGCGGCG GCGCCGCCGC
  GCGGAGGAGG CGCGCGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363742883	MGP_WTSI_4_152856782	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211921247					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363742883	MGP_WTSI_4_152856782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:153567130 () rs orientation: forward

Symbol	Name	Function Class
Ajap1	adherens junction associated protein 1	within coordinates
Cpgi15422	CpG island 15422	1727 bp distal
Cpgi15423	CpG island 15423	within coordinates
Gm69122	predicted gene, 69122	370 bp upstream
Rr605998	regulatory region 605998	within coordinates
Rr605999	regulatory region 605999	128 bp proximal
Rr606000	regulatory region 606000	417 bp proximal
Rr606001	regulatory region 606001	1923 bp proximal
Tssr44844	transcription start site region 44844	95 bp downstream
Tssr44845	transcription start site region 44845	266 bp downstream
Tssr44846	transcription start site region 44846	1298 bp downstream