rs211927406 SNP Detail

Summary

• ID
  rs211927406
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110231409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATTTGA ACCTGTCCAC
  AGCTAAGAAA TAGTCACAGT TCTTTTTTTT TTTTTTTTTT TTAATCTGTA GCTACTGTTG
  CTGGCTGTGG GAATGGTATC ACCCATTTGT AATCAACCAA GGGTACCAGA CGATTTCTAG
  AAAGTTCAGC ACCAGCAGGT TGTCTGAACA GCTAAGGGTG GAAAGGAGAG ATGGGGTGGG
  M
  CAGAAACCAG TTCTTTTTTT AGTTCTTGCT TGGTGTCAAC TATTCTTCTA GCCACTTTCT
  ATACCTTATC TCACCAAGTT CTTACAGTAG CTTTCTGAAG GAGGTGTTAT TATCTCTCTT
  AGTAGATAAG GAAGCTGAAC TTCAGAGAGG TGAAGTAACT CAGGCAAGGT CACACAGCGA
  GTGGTGGAAC GTGGCTATGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322397545	CHEV_7_117775716	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211927406					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110231409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19578	CpG island 19578	1399 bp distal
Gm28863	predicted gene 28863	1305 bp upstream
Gm72687	predicted gene, 72687	1980 bp upstream
Rr400547	regulatory region 400547	1694 bp downstream
Rr653271	regulatory region 653271	1991 bp distal
Rr653272	regulatory region 653272	1490 bp distal
Rr653273	regulatory region 653273	1836 bp distal
Rr653274	regulatory region 653274	279 bp distal