rs211933817 SNP Detail

Summary

• ID
  rs211933817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58279426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcactttct cagtcagtct ctgtgtcttt
  ctgtctgtct tctctgtctc ccAGAGGCCT CACACATGTA AAACATACAT TCGTCCACTG
  CAAAGGTCAC ACTTTCCTTT TGAAATGCTC TAGGCACCCA TACTGCCTTG TCTTCTTCTT
  Y
  TTTTTTTTTt tttggttttt cgagacagca tttctctgta tagctctgga catcctggaa
  cccactttgt agaccaggct ggcctcgaac CTGCCTTGGT TTTTAATTTG GAAGCTGTGC
  CAAAGAATTA Atttcttcct tccttccttc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690077	CHEV_11_58202102	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211933817					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58279426 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr3508	transcription start site region 3508	1707 bp downstream
Tssr101739	transcription start site region 101739	1839 bp downstream
Tssr101740	transcription start site region 101740	1794 bp downstream
Tssr101741	transcription start site region 101741	1776 bp downstream
Tssr101742	transcription start site region 101742	1488 bp upstream
Tssr101743	transcription start site region 101743	1557 bp upstream
Tssr101744	transcription start site region 101744	1639 bp upstream
Tssr101745	transcription start site region 101745	1668 bp upstream
Tssr108157	transcription start site region 108157	1796 bp upstream
Tssr108158	transcription start site region 108158	1764 bp upstream
Tssr108159	transcription start site region 108159	1551 bp downstream
Tssr108160	transcription start site region 108160	1564 bp downstream
Tssr108161	transcription start site region 108161	1629 bp downstream
Tssr108162	transcription start site region 108162	1658 bp downstream