rs211938232 SNP Detail

Summary

• ID
  rs211938232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86589285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTGTAC AGCCATCTGG
  AGTCATAAGG GTTCAGGGAA TTTCTTTCCT GGAAAAAGAT ACAGGTGCAG GCCTTCTAGT
  TCCTTGCAAG GGAAACTAGA AGGAACAGTT GAAGATAGGA AGGAAGCTCT TGTGCCCTAG
  CTACATAGAT CCCCTGTCAC CAGAATATGT AATAAGAGCA ACAGCAACAG TGCTGGGCCC
  Y
  ACTAACCGGG GCTTGTGGAA GGTGCCTTTG GAGCTATGGA ATTTGAACTC TGGGCAGCAC
  TCACCTCCAC GTCAATCATT TCCCCAAAGT TGCATACACA CAAGCGCTGC TTACTTTTTC
  AAAGGTCCAA AGAGCCAAAC TGGCTTCATT AATATGTGTG CCTGAATCAA TCCATTGCAG
  GCACTGGAAG ACACCACCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362287741	MGP_WTSI_4_86316952	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211938232					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362287741	MGP_WTSI_4_86316952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86589285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	874 bp distal
Plin2	perilipin 2	988 bp upstream
Rr376780	regulatory region 376780	324 bp upstream
Rr594784	regulatory region 594784	999 bp distal
Rr594785	regulatory region 594785	498 bp distal
Rr594786	regulatory region 594786	within coordinates
Rr594787	regulatory region 594787	773 bp proximal
Rr594788	regulatory region 594788	1529 bp proximal
Tssr1221	transcription start site region 1221	795 bp downstream
Tssr37738	transcription start site region 37738	844 bp downstream
Tssr42337	transcription start site region 42337	1587 bp upstream
Tssr42338	transcription start site region 42338	1563 bp upstream
Tssr42339	transcription start site region 42339	1541 bp upstream
Tssr42340	transcription start site region 42340	1023 bp upstream
Tssr42341	transcription start site region 42341	1005 bp upstream
Tssr42342	transcription start site region 42342	1351 bp downstream
Tssr42343	transcription start site region 42343	1510 bp downstream