rs211964343 SNP Detail

Summary

• ID
  rs211964343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79888828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCTGGT GTCATTGACC
  TATCTATCAC CCTAGTACCT AGGAGTCTAA GGCAGGATTG CTGAGTTCTA AGACCGGCTG
  AACTGTAAAA TTGGGGGTCG AGGGGGGGGG GAGAAGCTAC ATCTGGGGTT CGGGACTCAA
  TGGGTTGAGA GCCCTCACTT GCATGCTGCA GGTTCTGGGT TCCATCCCTA CACCTCATGG
  Y
  AGCACACTTT TGCCATTCCA TAGTTTAGGT TAGCCTGAGC TACAGGAGGC AACCTCTGAT
  AAAGAAAATA GAAATGGAAG GGATGTGGGG ATTGGCCGAC ACCGAGATCC CAGCACTCAG
  TAGGCTGAGG CTGGCGGTCC AGGGGTTCAA GGTCATCCTC TGCTATATAA ACAGTCCAAG
  GCTAGCCTGG GTTACATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381013924	MGP_WTSI_10_79515739	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211964343					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381013924	MGP_WTSI_10_79515739	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79888828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	256 bp proximal
Gm65896	predicted gene, 65896	188 bp downstream
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	8 bp downstream
Rr402035	regulatory region 402035	309 bp upstream
Rr435055	regulatory region 435055	997 bp distal
Rr435056	regulatory region 435056	557 bp distal
Rr435057	regulatory region 435057	4 bp proximal
Rr435058	regulatory region 435058	976 bp proximal
Rr435059	regulatory region 435059	1191 bp proximal
Rr435060	regulatory region 435060	1422 bp proximal
Tssr94472	transcription start site region 94472	193 bp upstream
Tssr94473	transcription start site region 94473	565 bp upstream
Tssr94474	transcription start site region 94474	629 bp upstream
Tssr94475	transcription start site region 94475	972 bp upstream
Tssr94476	transcription start site region 94476	1003 bp upstream
Tssr94477	transcription start site region 94477	1035 bp upstream
Tssr94478	transcription start site region 94478	1052 bp upstream
Tssr98381	transcription start site region 98381	365 bp downstream