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rs211970457 SNP Detail
Summary
  • ID
    rs211970457
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127778 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCTCC TCCATCTTTC CCTCTTTCAT
Y
TCATTGCCCT GCTCCTCCAA CACGT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198928 CHEV_7_51733724 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs211970457 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127778 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 2000 bp downstream
Tssr2223 transcription start site region 2223 1821 bp downstream
Tssr2224 transcription start site region 2224 975 bp downstream
Tssr2225 transcription start site region 2225 935 bp downstream
Tssr2226 transcription start site region 2226 409 bp downstream
Tssr2227 transcription start site region 2227 657 bp upstream
Tssr2228 transcription start site region 2228 1724 bp upstream
Tssr2229 transcription start site region 2229 2000 bp upstream
Tssr66214 transcription start site region 66214 1982 bp downstream
Tssr66215 transcription start site region 66215 1952 bp downstream
Tssr66216 transcription start site region 66216 1905 bp downstream
Tssr66217 transcription start site region 66217 1833 bp downstream
Tssr66218 transcription start site region 66218 1779 bp downstream
Tssr66219 transcription start site region 66219 1737 bp downstream
Tssr66220 transcription start site region 66220 1703 bp downstream
Tssr66221 transcription start site region 66221 1684 bp downstream
Tssr66222 transcription start site region 66222 1631 bp downstream
Tssr66223 transcription start site region 66223 1564 bp downstream
Tssr66224 transcription start site region 66224 1541 bp downstream
Tssr66225 transcription start site region 66225 1521 bp downstream
Tssr66226 transcription start site region 66226 1508 bp downstream
Tssr66227 transcription start site region 66227 1467 bp downstream
Tssr66228 transcription start site region 66228 1464 bp downstream
Tssr66229 transcription start site region 66229 1451 bp downstream
Tssr66230 transcription start site region 66230 1431 bp downstream
Tssr66231 transcription start site region 66231 1396 bp downstream
Tssr66232 transcription start site region 66232 1384 bp downstream
Tssr66233 transcription start site region 66233 1362 bp downstream
Tssr66234 transcription start site region 66234 1332 bp downstream
Tssr66235 transcription start site region 66235 1312 bp downstream
Tssr66236 transcription start site region 66236 1285 bp downstream
Tssr66237 transcription start site region 66237 1264 bp downstream
Tssr66238 transcription start site region 66238 1245 bp downstream
Tssr66239 transcription start site region 66239 1194 bp downstream
Tssr66240 transcription start site region 66240 1113 bp downstream
Tssr66241 transcription start site region 66241 1101 bp downstream
Tssr66242 transcription start site region 66242 1021 bp downstream
Tssr66243 transcription start site region 66243 1007 bp downstream
Tssr66244 transcription start site region 66244 956 bp downstream
Tssr66245 transcription start site region 66245 894 bp downstream
Tssr66246 transcription start site region 66246 866 bp downstream
Tssr66247 transcription start site region 66247 819 bp downstream
Tssr66248 transcription start site region 66248 778 bp downstream
Tssr66249 transcription start site region 66249 755 bp downstream
Tssr66250 transcription start site region 66250 736 bp downstream
Tssr66251 transcription start site region 66251 711 bp downstream
Tssr66252 transcription start site region 66252 680 bp downstream
Tssr66253 transcription start site region 66253 652 bp downstream
Tssr66254 transcription start site region 66254 604 bp downstream
Tssr66255 transcription start site region 66255 577 bp downstream
Tssr66256 transcription start site region 66256 528 bp downstream
Tssr66257 transcription start site region 66257 517 bp downstream
Tssr66258 transcription start site region 66258 474 bp downstream
Tssr66259 transcription start site region 66259 438 bp downstream
Tssr66260 transcription start site region 66260 331 bp downstream
Tssr66261 transcription start site region 66261 310 bp downstream
Tssr66262 transcription start site region 66262 303 bp downstream
Tssr66263 transcription start site region 66263 291 bp downstream
Tssr66264 transcription start site region 66264 267 bp downstream
Tssr66265 transcription start site region 66265 224 bp downstream
Tssr66266 transcription start site region 66266 207 bp downstream
Tssr66267 transcription start site region 66267 170 bp downstream
Tssr66268 transcription start site region 66268 154 bp downstream
Tssr66269 transcription start site region 66269 118 bp downstream
Tssr66270 transcription start site region 66270 83 bp downstream
Tssr66271 transcription start site region 66271 51 bp downstream
Tssr66272 transcription start site region 66272 within coordinates
Tssr66273 transcription start site region 66273 6 bp upstream
Tssr66274 transcription start site region 66274 21 bp upstream
Tssr66275 transcription start site region 66275 29 bp upstream
Tssr66276 transcription start site region 66276 58 bp upstream
Tssr66277 transcription start site region 66277 66 bp upstream
Tssr66278 transcription start site region 66278 98 bp upstream
Tssr66279 transcription start site region 66279 145 bp upstream
Tssr66280 transcription start site region 66280 184 bp upstream
Tssr66281 transcription start site region 66281 215 bp upstream
Tssr66282 transcription start site region 66282 241 bp upstream
Tssr66283 transcription start site region 66283 255 bp upstream
Tssr66284 transcription start site region 66284 272 bp upstream
Tssr66285 transcription start site region 66285 287 bp upstream
Tssr66286 transcription start site region 66286 324 bp upstream
Tssr66287 transcription start site region 66287 342 bp upstream
Tssr66288 transcription start site region 66288 378 bp upstream
Tssr66289 transcription start site region 66289 426 bp upstream
Tssr66290 transcription start site region 66290 487 bp upstream
Tssr66291 transcription start site region 66291 516 bp upstream
Tssr66292 transcription start site region 66292 554 bp upstream
Tssr66293 transcription start site region 66293 572 bp upstream
Tssr66294 transcription start site region 66294 593 bp upstream
Tssr66295 transcription start site region 66295 878 bp upstream
Tssr66296 transcription start site region 66296 1011 bp upstream
Tssr66297 transcription start site region 66297 1054 bp upstream
Tssr66298 transcription start site region 66298 1079 bp upstream
Tssr66299 transcription start site region 66299 1148 bp upstream
Tssr66300 transcription start site region 66300 1155 bp upstream
Tssr66301 transcription start site region 66301 1179 bp upstream
Tssr66302 transcription start site region 66302 1193 bp upstream
Tssr66303 transcription start site region 66303 1234 bp upstream
Tssr66304 transcription start site region 66304 1242 bp upstream
Tssr66305 transcription start site region 66305 1252 bp upstream
Tssr66306 transcription start site region 66306 1286 bp upstream
Tssr66307 transcription start site region 66307 1343 bp upstream
Tssr66308 transcription start site region 66308 1396 bp upstream
Tssr66309 transcription start site region 66309 1417 bp upstream
Tssr66310 transcription start site region 66310 1455 bp upstream
Tssr66311 transcription start site region 66311 1532 bp upstream
Tssr66312 transcription start site region 66312 1548 bp upstream
Tssr66313 transcription start site region 66313 1569 bp upstream
Tssr66314 transcription start site region 66314 1577 bp upstream
Tssr66315 transcription start site region 66315 1597 bp upstream
Tssr66316 transcription start site region 66316 1656 bp upstream
Tssr66317 transcription start site region 66317 1668 bp upstream
Tssr66318 transcription start site region 66318 1713 bp upstream
Tssr66319 transcription start site region 66319 1736 bp upstream
Tssr66320 transcription start site region 66320 1763 bp upstream
Tssr66321 transcription start site region 66321 1781 bp upstream
Tssr66322 transcription start site region 66322 1801 bp upstream
Tssr66323 transcription start site region 66323 1847 bp upstream
Tssr66324 transcription start site region 66324 1876 bp upstream
Tssr66325 transcription start site region 66325 1906 bp upstream
Tssr66326 transcription start site region 66326 1947 bp upstream
Tssr66327 transcription start site region 66327 1961 bp upstream
Tssr66328 transcription start site region 66328 1977 bp upstream
Tssr72199 transcription start site region 72199 871 bp upstream
Tssr72200 transcription start site region 72200 75 bp downstream
Tssr72201 transcription start site region 72201 576 bp downstream
Tssr72202 transcription start site region 72202 1439 bp downstream
Tssr72203 transcription start site region 72203 1825 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory