rs211975638 SNP Detail

Summary

• ID
  rs211975638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85966023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTAGGATCC AGGATAGGCA CCTTTCATTT
  ATCCATGCCC TTGAACTCCA GTTTGCCTGG CCAGCCCACC TCCCCCAACC CCCATTTCCT
  CCTATCTGGA GGATATTTGG TGTGCTAGTG CTCCGTTCAC CAATcacaca cacacacaca
  Y
  acacacacac acacacacac acacacacac acTTGAGCAG CTACAGAATG TAGGAGGAAG
  TTCTGCTTGT TTGAGCAATG TTCCTCTCAA CCTTAGGGCA GTGGCCCAGG AGACCTCTGT
  CCTGACTTCT CCCCTGTTCA GTAATCACAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319827690	CHEV_1_87934876	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211975638					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85966023 () rs orientation: forward

Symbol	Name	Function Class
Rr414457	regulatory region 414457	within coordinates
Rr414458	regulatory region 414458	1807 bp proximal
Tssr140	transcription start site region 140	1358 bp upstream
Tssr7715	transcription start site region 7715	1337 bp upstream
Tssr7716	transcription start site region 7716	1362 bp upstream