rs211980093 SNP Detail

Summary

• ID
  rs211980093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5775459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATTTTTC TCTTTCTAAC
  ACCTCAGCAT AGAGCTATGG CCAGATATAA CAGCATGAAT ATGTAATCCT AGCAGTAACG
  AGTCTGTAAT TATTTGACCA TAAACAAGAG CCAAGAACCT AAATACCAAT AATAACTTTG
  GGACTTCAAA GTCTTTGCCC CACAGAAAGA AAGTTTATTA ATAAATTAGC CTTGGTAGAT
  R
  CACACAATCA TCGCACCTGG CAATGGGCAA AGAGATATCT TGTTGGCAGT GATGTTCTTC
  TATCAGTCAG GGCAGAGCAG ACATCCGATC TTTGTTCATC CTAGATTGAT GCCTGGCTTG
  GTGGCCAGAG CTCTTTTATG ACTAGGACAC ATAAAATCAA ATCAGATCAA ATCCAGGCAG
  CAGCACAGCA TGGGAGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223074	CHEV_13_5724706	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211980093					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5775459 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	815 bp upstream
Gm57599	predicted gene, 57599	12 bp upstream
Rr387902	regulatory region 387902	753 bp downstream
Rr474521	regulatory region 474521	1951 bp distal
Rr474522	regulatory region 474522	747 bp distal
Tssr121308	transcription start site region 121308	1002 bp upstream