rs211980855 SNP Detail

Summary

• ID
  rs211980855
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17840235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCG ATGTGGGTCG GCGGTGGGGG
  K
  TAGGAGCCCC AGAGATTCCT CCCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320673702	CHEV_3_17686071	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211980855					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17840235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	within coordinates
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	355 bp downstream
Gm66000	predicted gene, 66000	1269 bp downstream
Rr573837	regulatory region 573837	1664 bp distal
Rr573838	regulatory region 573838	470 bp distal
Rr573839	regulatory region 573839	142 bp distal
Rr573840	regulatory region 573840	23 bp distal
Rr573841	regulatory region 573841	within coordinates
Rr573842	regulatory region 573842	276 bp proximal
Rr573843	regulatory region 573843	1057 bp proximal
Tssr32672	transcription start site region 32672	755 bp upstream
Tssr32673	transcription start site region 32673	514 bp upstream
Tssr32674	transcription start site region 32674	487 bp upstream
Tssr32675	transcription start site region 32675	455 bp upstream
Tssr32676	transcription start site region 32676	236 bp downstream
Tssr32677	transcription start site region 32677	763 bp downstream