rs212000987 SNP Detail

Summary

• ID
  rs212000987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83466468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTCCGAT CACTGGGGTT
  GGCACAGACC TGGAACCCCC TCTTGCTGAT AAAGCTGAAG AAAAAGGAGA AGAAAGATTA
  TAATCAGAGT TAATCTAGTA AAGGGGTGGT GGGAGCCCCA TCCTCTGAAC CTTCTGATTT
  TCCACTCAAC AGTCTGTTCT TTCCAGGAGG TAGCTCAGCA CCATCATCCC CTCTCTGGGG
  Y
  CCCCTCTAGA CCTGTGAGGG TCTCTAAGGA CTCATGGAGT GACTCTGCTA GCTGTTTCCT
  TCTCTACACC CTGAAGTATC CCCCCTCCCA CCTGGTGAGA TCCAAGAATG GGTCTTCTCT
  GGAAGTCTAT CCACCAGGCC ATCTAAGATC CTGGAGGCTC CCCCTCCCCA TAACACACAA
  TGAGTGAATT TGACACTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072523	MGP_WTSI_11_83389144	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212000987					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072523	MGP_WTSI_11_83389144	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83466468 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccl9	C-C motif chemokine ligand 9			Intron
				Noncoding-Transcript-Variant
Tssr103714	transcription start site region 103714			962 bp downstream
Tssr103715	transcription start site region 103715			912 bp downstream
Tssr103716	transcription start site region 103716			276 bp downstream
Tssr109677	transcription start site region 109677			1958 bp upstream
Tssr109678	transcription start site region 109678			1577 bp upstream
Tssr109679	transcription start site region 109679			1293 bp upstream
Tssr109680	transcription start site region 109680			1042 bp upstream
Tssr109681	transcription start site region 109681			923 bp upstream
Tssr109682	transcription start site region 109682			648 bp upstream
Tssr109683	transcription start site region 109683			600 bp upstream
Tssr109684	transcription start site region 109684			574 bp upstream
Tssr109685	transcription start site region 109685			533 bp upstream
Tssr109686	transcription start site region 109686			464 bp upstream
Tssr109687	transcription start site region 109687			410 bp upstream
Tssr109688	transcription start site region 109688			369 bp upstream
Tssr109689	transcription start site region 109689			327 bp upstream
Tssr109690	transcription start site region 109690			318 bp upstream
Tssr109691	transcription start site region 109691			304 bp upstream
Tssr109692	transcription start site region 109692			276 bp upstream
Tssr109693	transcription start site region 109693			159 bp upstream
Tssr109694	transcription start site region 109694			221 bp downstream
Tssr109695	transcription start site region 109695			271 bp downstream
Tssr109696	transcription start site region 109696			1305 bp downstream
Tssr109697	transcription start site region 109697			1495 bp downstream