rs212002079 SNP Detail

Summary

• ID
  rs212002079
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136061112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCATGGG CCGGGTGGGA
  GTGAGACATG TCAATATGGC ATCTACAGCA GATGGGGAGA GGGGAGCTAC CTGCCGTAAA
  AAGAAAATGG AAGCCCAACC TCCAACCAGT GTGAACCTGG ACTGACAGGA CAGGAGACGG
  GGTGCTCTAT CCATGGGGTC TTTCCTTTAG ACTCCATTTT ACCGGAGAGA GCCAAACAAA
  K
  GCCTTCCCCC TTGATTCATA CTCCCCAGTC TGGGCCTGGC ATGGTAAAAT ATTGGAGTTC
  CCACTTCAGG AGCCTGGGGG CATGGGCACC TGTATAGAAA ATAAAGGGAA AGCTAGTGTT
  CCTTCCCACA ATGACTATCG GGACGTTTCT GGGACCTTTA CCACAGAGAA GGGCTGGTGG
  CTGCCTTCTG CACCCAGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351559711	MGP_WTSI_1_138029951	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212002079					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351559711	MGP_WTSI_1_138029951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136061112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	1107 bp distal
Kif21b	kinesin family member 21B	within coordinates
Rr367010	regulatory region 367010	1739 bp upstream
Rr396320	regulatory region 396320	1963 bp downstream
Rr419369	regulatory region 419369	1975 bp distal
Rr419370	regulatory region 419370	1955 bp distal
Tssr9041	transcription start site region 9041	1993 bp downstream
Tssr9042	transcription start site region 9042	1970 bp downstream
Tssr9043	transcription start site region 9043	1933 bp downstream
Tssr9044	transcription start site region 9044	1880 bp downstream
Tssr9045	transcription start site region 9045	335 bp downstream
Tssr13915	transcription start site region 13915	306 bp upstream
Tssr13916	transcription start site region 13916	1734 bp downstream
Tssr13917	transcription start site region 13917	1782 bp downstream
Tssr13918	transcription start site region 13918	1806 bp downstream