rs212009408 SNP Detail

Summary

• ID
  rs212009408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78230791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTGTGGA TAGTCCTCAT
  CCTGGTCTTT CTCATCCTCA CCTTGCTCCT GATCCTTCGC TTTGGCTGTG TCTCTGTATA
  CAGGTAAGTG CACTCTGTGC GCAGAGGAAA GTGGAAACTG GGCTCCGGGG TCACAGAGAT
  GACACAGCTG GATACACTCT CGTTCCCAGC CTACCATTCA CTCCCCTGGT TTCAGTTTTC
  Y
  CTCTATACGT GGGCACAGAA GTAGCTGGCA CAGAGGTCTA TGGAATCTCA CATACACGTG
  TCCCCACCCT CCTGCTGTCT TCCAGGACGT ACAGGAAGTG GAAGGAAAAG ATCCCCAACC
  CCAGCAAGAG CCTCCTGTTC CAGGTAGGAA GGCAGGCCCT GCTGCTGGCT CCCTGTCCCA
  TTCCTGTGTC CGTGGGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss394652009	MGP_WTSI_15_78177021	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs212009408					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394652009	MGP_WTSI_15_78177021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78230791 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Rr505249	regulatory region 505249	1797 bp proximal
Tssr131930	transcription start site region 131930	1680 bp downstream
Tssr131931	transcription start site region 131931	1096 bp downstream
Tssr131932	transcription start site region 131932	1476 bp upstream
Tssr131933	transcription start site region 131933	1560 bp upstream
Tssr131934	transcription start site region 131934	1624 bp upstream
Tssr131935	transcription start site region 131935	1689 bp upstream