rs212009526 SNP Detail

Summary

• ID
  rs212009526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20188845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCCTCGG CTGGGACTCC
  TGCGCGCGCC CGGCCCAGGG CTCTGCGCAC GCGTGCTTTT TTCCCCTTTC TTCCCTGCCC
  ATGGCAACGC CGCCGCGTGT GTTAGTTTCC GAGCCTTGCT TGTTGTTGGC CTTGGGGGAG
  GCGTCTTCCT TCCTGGTCCT AGCCTTTGGG ACTCGGAGGA GATAACGGCG AGCTGCGACA
  R
  AGTTAAGCAA CGGAATCAGC CACGTCGTGC GTGGCGGTTA AGCCGCCTCC CTCGCCTCTA
  TGGGGTACAT ATGTCGGTTT AGGCCAGGCT TAATCAGATG AAGGCTTTCG ATCTGTTTGT
  AGCAGACACC TGGGTGTTGG CGCCAAAGTT TTTCGTTTTG GCTCCCTACC AACTCACTGT
  TGTAGCCGAT CAGTAGGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379649396	MGP_WTSI_10_20032905	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212009526					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379649396	MGP_WTSI_10_20032905	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20188845 () rs orientation: forward

Symbol	Name	Function Class
4933406P04Rik	RIKEN cDNA 4933406P04 gene	250 bp upstream
Bclaf1	BCL2-associated transcription factor 1	within coordinates
Cpgi1349	CpG island 1349	within coordinates
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2	929 bp distal
Gm67769	predicted gene, 67769	within coordinates
Rr428530	regulatory region 428530	552 bp distal
Rr428531	regulatory region 428531	1067 bp distal
Rr428532	regulatory region 428532	261 bp distal
Rr428533	regulatory region 428533	within coordinates
Rr428534	regulatory region 428534	1872 bp proximal
Tssr92593	transcription start site region 92593	699 bp downstream
Tssr92594	transcription start site region 92594	607 bp downstream
Tssr92595	transcription start site region 92595	581 bp downstream
Tssr92596	transcription start site region 92596	560 bp downstream
Tssr92597	transcription start site region 92597	123 bp downstream
Tssr96944	transcription start site region 96944	821 bp upstream