rs212022738 SNP Detail

Summary

• ID
  rs212022738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106478092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGATTTC TGAATTCAAG
  GCCAGCCTGG TCTACAAAGT GAGTTCCAGG GCAGCCAGGA CTACACAGAG AAACCCTGTC
  TCAAAAAAAC CAAAAAAAAA AAAAAAAATA TATATATATA TATATATATA TATATATATA
  TATATATATA TATTAAATGG GGGCTGGAGA TGGCTCAGAG GTTAAGAGCA CTGGATGCTC
  Y
  GGGGGACTTT GGTTCAATTC CCAGCACCCA CATGTCAGCT TACAATTGTC TGTAATTCCA
  GTTCCAGGGA ATCTGACATA CCCGCACATC AGCCTGTATG CAGGCAAAAC ACCAATGCAA
  ATGAAAAATA AAAAGGAACC ATCAAAGCAA ATTCTAAAAG GCTAAAACAT TATTAAATGT
  ATTACATTAA AGTCTAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246842	CHEV_4_106293500	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212022738					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106478092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	1488 bp proximal
Gm69799	predicted gene, 69799	1411 bp downstream
Rr596779	regulatory region 596779	1660 bp distal
Rr596780	regulatory region 596780	1047 bp proximal
Tssr38185	transcription start site region 38185	1529 bp upstream
Tssr38186	transcription start site region 38186	1591 bp upstream
Tssr38187	transcription start site region 38187	1633 bp upstream
Ttc22	tetratricopeptide repeat domain 22	1554 bp upstream