rs212030781 SNP Detail

Summary

• ID
  rs212030781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAGGGA GGGTGAAGGA
  AGGGAGGGAG GTACACAGGG TGGACCTCTG CAGTCCACAC TGCAGCCCTG CTCAGCTTCT
  AGAATCTGTG ACCCAGTTCC CATCGGCTGG TCCTCACCCA CCTTCCCCAG GGCATTGAGG
  GCTGAGAGAG GGTGTCGTTT CTGAAGGATG GCAACTAAAG CTTACCCAAG TCCTTTGCCC
  R
  GGATCTTCCC ACCATGCTTG GGTGCCCCTA AGATGCTAGC AGCATTCCCA GGGCTGTGCA
  GGAAAGGGAT CTGAAGGAGG ACCAGAACCA GGGAAATAAT ACCCCATGGC CACGAGGGCA
  TAAAAGAATT AGCCAGTCAC AAAATGTTGA TCTTCAAGTT GGATTTATGT CCAAGATTTG
  TGCAAACGGC TGCCTAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323674150	CHEV_11_54724142	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212030781					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801466 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	253 bp downstream
Tnip1	TNFAIP3 interacting protein 1	145 bp downstream
Tssr3502	transcription start site region 3502	996 bp upstream
Tssr3503	transcription start site region 3503	524 bp downstream
Tssr101565	transcription start site region 101565	1573 bp downstream
Tssr101566	transcription start site region 101566	1527 bp downstream
Tssr101567	transcription start site region 101567	1164 bp downstream
Tssr101568	transcription start site region 101568	1090 bp downstream
Tssr101569	transcription start site region 101569	1007 bp downstream
Tssr101570	transcription start site region 101570	956 bp downstream
Tssr101571	transcription start site region 101571	880 bp downstream
Tssr101572	transcription start site region 101572	836 bp downstream
Tssr101573	transcription start site region 101573	809 bp downstream
Tssr101574	transcription start site region 101574	784 bp downstream
Tssr101575	transcription start site region 101575	737 bp downstream
Tssr101576	transcription start site region 101576	716 bp downstream
Tssr101577	transcription start site region 101577	694 bp downstream
Tssr101578	transcription start site region 101578	609 bp downstream
Tssr108009	transcription start site region 108009	1989 bp upstream
Tssr108010	transcription start site region 108010	1569 bp upstream
Tssr108011	transcription start site region 108011	953 bp upstream
Tssr108012	transcription start site region 108012	872 bp upstream
Tssr108013	transcription start site region 108013	852 bp upstream
Tssr108014	transcription start site region 108014	837 bp upstream
Tssr108015	transcription start site region 108015	756 bp upstream
Tssr108016	transcription start site region 108016	694 bp upstream
Tssr108017	transcription start site region 108017	653 bp upstream
Tssr108018	transcription start site region 108018	632 bp upstream
Tssr108019	transcription start site region 108019	563 bp upstream
Tssr108020	transcription start site region 108020	544 bp upstream
Tssr108021	transcription start site region 108021	527 bp upstream
Tssr108022	transcription start site region 108022	484 bp upstream
Tssr108023	transcription start site region 108023	260 bp upstream