rs212039513 SNP Detail

Summary

• ID
  rs212039513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25592935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCAGTAG AGGGCAGGTC
  TGTCCGGTCT AACGCAGGCC TCCCTCGTGG AGACATTGAC ATTTAAATAT AAGTAACGCC
  AGGCAGACAA AGTGGACTCA ATTTTACGGT AAAATTGTCA GCCCAGGGAC CGAGCACCGA
  GAGATGCGGC TTTGGGGGCT GGGGGCGGGG AGGAGGATGC TGATGTCAGC CGTGTGGGTC
  Y
  AAGGTACTCG GAGTGTGTAG TGAAAAAGTC GCCCCCGGAA GCTCTGCAGG ACTAGGCCTG
  GCTTCGCGGG TGGGAAGTAC GGTGCGAGGC AAAGGCAGCC TGGCAGCCTG GGGGCTGAGG
  GCTGCAGCCA GGTGAGCCGG CAGGAAGGCG GGACGCCCGG CAGCACACGC CCCGAAAGCT
  CCCCTGATGA AACCGCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373995068	MGP_WTSI_8_26213391	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212039513					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373995068	MGP_WTSI_8_26213391	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25592935 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	within coordinates
Gm45745	predicted gene 45745	570 bp downstream
Gm63713	predicted gene, 63713	548 bp downstream
Plekha2	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	543 bp upstream
Rr368503	regulatory region 368503	99 bp upstream
Rr661038	regulatory region 661038	1693 bp distal
Rr661039	regulatory region 661039	1177 bp distal
Rr661040	regulatory region 661040	945 bp distal
Rr661041	regulatory region 661041	1086 bp distal
Rr661042	regulatory region 661042	581 bp distal
Rr661043	regulatory region 661043	53 bp distal
Rr661044	regulatory region 661044	180 bp distal
Rr661045	regulatory region 661045	948 bp proximal
Rr661046	regulatory region 661046	1556 bp proximal
Rr661047	regulatory region 661047	1760 bp proximal
Rr661048	regulatory region 661048	1900 bp proximal
Tssr2524	transcription start site region 2524	1292 bp downstream
Tssr76668	transcription start site region 76668	1815 bp downstream
Tssr76669	transcription start site region 76669	1033 bp downstream
Tssr76670	transcription start site region 76670	966 bp downstream
Tssr76671	transcription start site region 76671	566 bp upstream
Tssr80677	transcription start site region 80677	1311 bp upstream
Tssr80678	transcription start site region 80678	1206 bp upstream
Tssr80679	transcription start site region 80679	1127 bp upstream
Tssr80680	transcription start site region 80680	750 bp upstream
Tssr80681	transcription start site region 80681	725 bp upstream
Tssr80682	transcription start site region 80682	531 bp upstream
Tssr80683	transcription start site region 80683	349 bp upstream
Tssr80684	transcription start site region 80684	95 bp downstream
Tssr80685	transcription start site region 80685	1742 bp downstream
Tssr80686	transcription start site region 80686	1781 bp downstream
Tssr80687	transcription start site region 80687	1872 bp downstream