rs212040195 SNP Detail

Summary

• ID
  rs212040195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70111727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTTGTA GTCTACTTCC
  GAGCAGCGTT TGTGCAGTCT TTCAGGCAGT CTTTCAACAT CTTGCACCCT CCTGTTTGCT
  CTTGTGAGTT CATTAATCTG CGTTTCACTT TAATCGTTGG TCAGATCTCT TCTCCCTTAA
  ACCAACATCG AAGAGCGACC TTTGCGGGTG TTTGACCTTA GCTTCCAGGA GAGTTAACAG
  R
  GCATGGATGG CTTAACTTGC AGAGCCCAAT TCAAAAAGTA TAACTCCTCT CCCACCAGGC
  TTCCCACTTA TCAGAAATTT ATAATTGCAA TCTGCTCAGG TTAAGATTGA AAATTAAAGT
  AGCTAGTATA TAAATTAGAG TAGTTATGAG TCGATTGCAA GTATTTTGCT GCAGTCATAT
  TTGTCATACT AGTTTCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396744565	MGP_WTSI_16_70315084	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212040195					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396744565	MGP_WTSI_16_70315084	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70111727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	140 bp distal
Gbe1	1,4-alpha-glucan branching enzyme 1	within coordinates
Rr517848	regulatory region 517848	765 bp distal
Rr517849	regulatory region 517849	1031 bp proximal
Tssr138939	transcription start site region 138939	863 bp downstream
Tssr138940	transcription start site region 138940	836 bp downstream
Tssr138941	transcription start site region 138941	823 bp downstream
Tssr138942	transcription start site region 138942	768 bp downstream
Tssr138943	transcription start site region 138943	743 bp downstream
Tssr138944	transcription start site region 138944	690 bp downstream
Tssr138945	transcription start site region 138945	341 bp downstream
Tssr138946	transcription start site region 138946	159 bp downstream
Tssr138947	transcription start site region 138947	909 bp upstream