rs212040321 SNP Detail

Summary

• ID
  rs212040321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184545126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCCCCC ATGGATGATA
  TGTCTTTTGA CATCATCAGC TATATGCCTT AGACCAGCCG TTCTCAACCT TCCTAATACG
  GCTCCTCATG TGGTGGCGAC CCCCAACCAT AAAATTCTTT TCACTGCTAC TTCATACCTG
  TAATAGTGCT ACTGTTAGGA ATCGTATCGT AAATACCTGA TAGGCAGGAT ATCTGATATG
  Y
  GGCCCCTGTG GAAGGATCGT GACCCACAGG TTGAGAAGTG CCCTGTACAC ACCAGTGACC
  AATTAAGGCT TAGAACCCAG GGAAGACACG TGGTGATCTT GTAAAATGAG TAAGAAGCAA
  AAGTCACAGA GGAAGTAGGA GAGACTCGCA CTTATTAATG ACAATGGAAC CACACAGCTG
  TAAGAGAGCT AACTCGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169581	CHEV_1_186636808	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212040321					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184545126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1592 bp distal
Gm70890	predicted gene, 70890	67 bp downstream
Mtarc1	mitochondrial amidoxime reducing component 1	1732 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	139 bp downstream
Rr425290	regulatory region 425290	995 bp distal
Rr425291	regulatory region 425291	489 bp distal
Rr425292	regulatory region 425292	560 bp distal
Rr425293	regulatory region 425293	412 bp distal
Rr425294	regulatory region 425294	1516 bp proximal
Tssr15650	transcription start site region 15650	1938 bp upstream
Tssr15651	transcription start site region 15651	1766 bp upstream
Tssr15652	transcription start site region 15652	1726 bp upstream
Tssr15653	transcription start site region 15653	1665 bp upstream
Tssr15654	transcription start site region 15654	1626 bp upstream
Tssr15655	transcription start site region 15655	1615 bp upstream