rs212060678 SNP Detail

Summary

• ID
  rs212060678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83009059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTTCC AAATTTGCCA
  GTGAATATGC ATCCTCCATC AGCACATTAA TGTGAGATGT GGATCCTGTT GTTGTTGGGG
  AGTGAACCAG GGGTGCTGTC TTGGGACAGG ACCTGATTAA GGTAGCGCTG GATGGGAAGG
  GCAGGGAGGG AATAAGTAGC AGAGACTGCT TTCAGCGCAT AGAAGAGGGT GGGGCTGCAC
  R
  TTCCATCTGG GCAGAAATGA AAGTGCTTTT CATGTAAACT TACTAGAGTT TCAGTTTTGT
  TTTTGTCTGG CTTTCATGTC TCCTCCCTAC TTATACCCCC TACCTCCATA CCTACCCAGC
  AAGGAGACTG TAGCAGAAAG ATCTTGCCCA GAATATCTTC CAGGTTGTTT TCCAACTCAA
  CTCTGCAAGA GCTGAGATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384065029	MGP_WTSI_11_82931735	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212060678					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384065029	MGP_WTSI_11_82931735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83009059 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
Rr247350	regulatory region 247350	458 bp distal
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	1544 bp downstream
Tssr103653	transcription start site region 103653	1436 bp downstream
Tssr103654	transcription start site region 103654	1383 bp downstream
Tssr103655	transcription start site region 103655	1351 bp downstream
Tssr103656	transcription start site region 103656	1315 bp downstream
Tssr103657	transcription start site region 103657	1265 bp downstream
Tssr103658	transcription start site region 103658	1234 bp downstream
Tssr103659	transcription start site region 103659	1212 bp downstream
Tssr103660	transcription start site region 103660	96 bp upstream
Tssr109644	transcription start site region 109644	1641 bp upstream