rs212061952 SNP Detail

Summary

• ID
  rs212061952
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129854042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGCACT CTGCGGCCCC
  GGCGTCCTGT GAGCTCTCGG GGCCCAAAGG GTCGCCCGGG GCAACCGGCC GGCGCCCAGG
  TCGGAGCAGA CGGTCGTGCG GGCCGCCGAC CCCTCCACTC CGGCCTCGGT CCGCGCGGGA
  GGGCAGGCCT GGATGGCAGG CGGCCGGCGG CCCCGCCCTG CCGGCCCTTC GGTCGCTCCC
  M
  TCGCCGCATC GCGGCCTCCA GGCTCCACCG CGGCCTCGGG GCCCCACCGC GGCCTCCCCG
  GTCCGGCCCT GCCCTGCCCG CCCCCAGCCA CCGCGCAGGC CGCCCGCCCG CCCGCCCGCT
  CTCCCTCCCT TCCGCCTGCC TAGGCCCCAC GCCGCGCCCC GGCCTCCCGC CTCACCGTTC
  TGCTGCGGCG GTGCCAGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359703465	MGP_WTSI_3_129763311	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212061952					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359703465	MGP_WTSI_3_129763311	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129854042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	within coordinates
Sec24b	SEC24 homolog B, COPII coat complex component	within coordinates
Tssr31665	transcription start site region 31665	374 bp upstream
Tssr35653	transcription start site region 35653	280 bp downstream
Tssr35654	transcription start site region 35654	342 bp downstream
Tssr35655	transcription start site region 35655	417 bp downstream
Tssr35656	transcription start site region 35656	445 bp downstream
Tssr35657	transcription start site region 35657	457 bp downstream
Tssr35658	transcription start site region 35658	626 bp downstream
Tssr35659	transcription start site region 35659	1092 bp downstream
Tssr35660	transcription start site region 35660	1174 bp downstream