rs212063090 SNP Detail

Summary

• ID
  rs212063090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123620304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAGCAG AAGGCCATGA
  GTTTGGCCAG TGTCTCCAAT ATACCCTGGA AAATCCAAGC AATAAAAATG AGATCCTATT
  TGGTACTGGA TGCTGTTGAT CTATTGAACA AGCTGGCTTC AGCATTCCAT TTGCAAGAGG
  GTAGAAGGGT TCAAAGGTAA GATAATTTGG CTTTTAGCAA TCTCAGGCCA CATACAGACC
  Y
  ACAAGAACCC AGGGTAGCCT TCAAAGGCTC AGCTGAACAT GCTGGCTTCT TCACACTGAA
  CAAAGTTGCC ATCATGGGTA AATTCTTGGT GGTAGGAGTA AGAAGGGGCC AGAGAGAACA
  GGAAGCTATC TAAGCTATCT ATTTGCCTGT CCTAGAAAAA GAAACAGTAA ACTGTCTACA
  ACATCAGGTG TGAGCTAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234320	CHEV_9_123700357	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212063090					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123620304 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	815 bp downstream
Tssr92158	transcription start site region 92158	830 bp downstream
Tssr92159	transcription start site region 92159	838 bp downstream
Tssr92160	transcription start site region 92160	1231 bp downstream
Tssr92161	transcription start site region 92161	1248 bp downstream