About   Help   FAQ
rs212070026 SNP Detail
Summary
  • ID
    rs212070026
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr19:5848772 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTAATCTTGT AAGCAATGTA
ATTAAAGTAG GCATTAATCA TGTAGGCTTT TGTGTTGAAG TTTACGATGC AAAAGCCTAT
TAGCTATCCC ATCATGAAAG CCCATCGGTG CAAGGCTTAG GAATTTTTAA GAGGCTGGAT
GGGAAAACTA CTCAAAATTC TGAACTGCCT AAGAGGGGCC AGCTGCAAAC ATTCAACAGC
K
CTACAGGTCT TTTTGGAAAA AGAGAAAAAA GGCACTTATC TATCCCTAAC ATGCAATACT
GCAGATCCAA GTTACACTTA TCTGTCAACA GCAGTCTGCT GTTTCCTGCT CCGAGATGGA
ATGAAGCAAC TCTTCTGCTT ATGAAGAGAA ACCTGTCTGA GGCAAACGAA ACATTGGCAC
ACTGCACCGC CTCGCAGCCG                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662584 MGP_WTSI_19_5798744 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212070026 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662584 MGP_WTSI_19_5798744 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848772 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 256 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Tssr5415 transcription start site region 5415 1878 bp upstream
Tssr5416 transcription start site region 5416 1429 bp upstream
Tssr5417 transcription start site region 5417 282 bp downstream
Tssr5418 transcription start site region 5418 765 bp downstream
Tssr5419 transcription start site region 5419 1419 bp downstream
Tssr5420 transcription start site region 5420 1436 bp downstream
Tssr157649 transcription start site region 157649 1915 bp upstream
Tssr157650 transcription start site region 157650 1850 bp upstream
Tssr157651 transcription start site region 157651 1780 bp upstream
Tssr157652 transcription start site region 157652 1640 bp upstream
Tssr157653 transcription start site region 157653 1556 bp upstream
Tssr157654 transcription start site region 157654 1502 bp upstream
Tssr157655 transcription start site region 157655 1476 bp upstream
Tssr157656 transcription start site region 157656 1443 bp upstream
Tssr157657 transcription start site region 157657 1323 bp upstream
Tssr157658 transcription start site region 157658 1217 bp upstream
Tssr157659 transcription start site region 157659 1113 bp upstream
Tssr157660 transcription start site region 157660 1017 bp upstream
Tssr157661 transcription start site region 157661 984 bp upstream
Tssr157662 transcription start site region 157662 891 bp upstream
Tssr157663 transcription start site region 157663 830 bp upstream
Tssr157664 transcription start site region 157664 716 bp upstream
Tssr157665 transcription start site region 157665 707 bp upstream
Tssr157666 transcription start site region 157666 675 bp upstream
Tssr157667 transcription start site region 157667 421 bp upstream
Tssr157668 transcription start site region 157668 380 bp upstream
Tssr157669 transcription start site region 157669 361 bp upstream
Tssr157670 transcription start site region 157670 345 bp upstream
Tssr157671 transcription start site region 157671 324 bp upstream
Tssr157672 transcription start site region 157672 274 bp upstream
Tssr157673 transcription start site region 157673 240 bp upstream
Tssr157674 transcription start site region 157674 228 bp upstream
Tssr157675 transcription start site region 157675 215 bp upstream
Tssr157676 transcription start site region 157676 200 bp upstream
Tssr157677 transcription start site region 157677 178 bp upstream
Tssr157678 transcription start site region 157678 164 bp upstream
Tssr157679 transcription start site region 157679 96 bp upstream
Tssr157680 transcription start site region 157680 69 bp upstream
Tssr157681 transcription start site region 157681 48 bp upstream
Tssr157682 transcription start site region 157682 35 bp upstream
Tssr157683 transcription start site region 157683 within coordinates
Tssr157684 transcription start site region 157684 6 bp downstream
Tssr157685 transcription start site region 157685 16 bp downstream
Tssr157686 transcription start site region 157686 31 bp downstream
Tssr157687 transcription start site region 157687 100 bp downstream
Tssr157688 transcription start site region 157688 150 bp downstream
Tssr157689 transcription start site region 157689 181 bp downstream
Tssr157690 transcription start site region 157690 259 bp downstream
Tssr157691 transcription start site region 157691 305 bp downstream
Tssr157692 transcription start site region 157692 359 bp downstream
Tssr157693 transcription start site region 157693 416 bp downstream
Tssr157694 transcription start site region 157694 474 bp downstream
Tssr157695 transcription start site region 157695 538 bp downstream
Tssr157696 transcription start site region 157696 559 bp downstream
Tssr157697 transcription start site region 157697 608 bp downstream
Tssr157698 transcription start site region 157698 624 bp downstream
Tssr157699 transcription start site region 157699 682 bp downstream
Tssr157700 transcription start site region 157700 731 bp downstream
Tssr157701 transcription start site region 157701 749 bp downstream
Tssr157702 transcription start site region 157702 785 bp downstream
Tssr157703 transcription start site region 157703 836 bp downstream
Tssr157704 transcription start site region 157704 862 bp downstream
Tssr157705 transcription start site region 157705 883 bp downstream
Tssr157706 transcription start site region 157706 931 bp downstream
Tssr157707 transcription start site region 157707 977 bp downstream
Tssr157708 transcription start site region 157708 987 bp downstream
Tssr157709 transcription start site region 157709 999 bp downstream
Tssr157710 transcription start site region 157710 1018 bp downstream
Tssr157711 transcription start site region 157711 1037 bp downstream
Tssr157712 transcription start site region 157712 1074 bp downstream
Tssr157713 transcription start site region 157713 1101 bp downstream
Tssr157714 transcription start site region 157714 1152 bp downstream
Tssr157715 transcription start site region 157715 1169 bp downstream
Tssr157716 transcription start site region 157716 1213 bp downstream
Tssr157717 transcription start site region 157717 1240 bp downstream
Tssr157718 transcription start site region 157718 1285 bp downstream
Tssr157719 transcription start site region 157719 1339 bp downstream
Tssr157720 transcription start site region 157720 1358 bp downstream
Tssr157721 transcription start site region 157721 1394 bp downstream
Tssr157722 transcription start site region 157722 1411 bp downstream
Tssr157723 transcription start site region 157723 1486 bp downstream
Tssr157724 transcription start site region 157724 1495 bp downstream
Tssr157725 transcription start site region 157725 1541 bp downstream
Tssr157726 transcription start site region 157726 1546 bp downstream
Tssr157727 transcription start site region 157727 1561 bp downstream
Tssr157728 transcription start site region 157728 1658 bp downstream
Tssr157729 transcription start site region 157729 1857 bp downstream
Tssr157730 transcription start site region 157730 1987 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory