rs212081699 SNP Detail

Summary

• ID
  rs212081699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107428852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCCAGC GCGTCCTCCT
  CGGCTCTTTC CCGCCGCCCT GCCTGGATCC TGGGGGCGGT GCCGAAGTCG CGGCCCGCCC
  TGCGGCCTCG CCCGCTCGGT ACTCACTAGC TGCTAGTCCG CTACAGCACC GGCCTGACCG
  GGCCATGTCG GCGGAGCCAG AACTCATTGA ACTACGCGAG CTGGCACCGT CCGGGCGCAT
  Y
  GGTCCAGGCC GTACCCGGCT GGAGCGTGCC AACGCTCTGC GCATCGCCCC GGGTACAACA
  CGCAATCCGT CACAGCAGCA CGTCCCGGGT CGTGGCCACC GTTTCCAGCC TGCAGGGCCC
  ACCACGCACA CGTGGTGCGA CCTCTGTGGA GACTTCATCT GGGGCGTCGT GCGCAAGGGC
  CTACAGTGCG CGCGTGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378850623	MGP_WTSI_9_107453984	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212081699					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378850623	MGP_WTSI_9_107453984	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107428852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22292	CpG island 22292	within coordinates
Gm34106	predicted gene, 34106	816 bp upstream
Gm68605	predicted gene, 68605	1857 bp downstream
Rassf1	Ras association (RalGDS/AF-6) domain family member 1	within coordinates
Rr368855	regulatory region 368855	400 bp downstream
Rr686535	regulatory region 686535	76 bp distal
Tssr86984	transcription start site region 86984	855 bp downstream
Tssr86985	transcription start site region 86985	213 bp downstream
Tssr86986	transcription start site region 86986	78 bp downstream
Tssr91394	transcription start site region 91394	816 bp upstream
Zmynd10	zinc finger, MYND domain containing 10	334 bp downstream