rs212082165 SNP Detail

Summary

• ID
  rs212082165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162536645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCCACCTT GGGTCAAAAC CCATAGAAGC
  CAGATGTTGA GGGTGGGGTT GCATTGGCTG GTAAAGGGGT CTGTGTGGTG GAGGAGGGAC
  TGAACCATTA GACGGCTGTG AGGGCACAGT CTGTGGAAGC ACACCTtgct gctgctgctg
  Y
  tgctgctgct gccactgttg ctgTTTCATC TGCTCCTGGA AAACCAAAAT CACACTTACT
  GACATTTCTA TTCTATAATT AATTAGTGTA ACCGTATTTG AAAACAAAGG TGTTTGGGAA
  ATTTAAAGAT AAAAACAATC AGCACAGAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320083510	CHEV_1_164639207	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212082165					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162536645 () rs orientation: forward

Symbol	Name	Function Class
Prrc2c	proline-rich coiled-coil 2C	within coordinates
Tssr9722	transcription start site region 9722	1269 bp upstream
Tssr14643	transcription start site region 14643	1233 bp upstream
Tssr14644	transcription start site region 14644	512 bp downstream
Tssr14645	transcription start site region 14645	1340 bp downstream
Tssr14646	transcription start site region 14646	1382 bp downstream
Tssr14647	transcription start site region 14647	1426 bp downstream
Tssr14648	transcription start site region 14648	1675 bp downstream