rs212087307 SNP Detail

Summary

• ID
  rs212087307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108904278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTTGTT CTTAATAGCT
  GAGTAGTATT CCATTGTGTA AATGAACCAC ATTTTCTGTA TCCATTCTTC TGTTGTGGGA
  CATCTGGGTT GTTTCCAGCT TCTGGCTATC ACACACAAGG CTGCTATGAA CATAGTGGAA
  CCTGTGCCCC TGTGGCCTGG TGGGTCATCT TTTGTGTGTA TTTGCAAGAG TGGTATTGCT
  R
  GGTCTTCAGG TAGATCTATT TCTAATTTTC TGAGGAACCT CCAAATTGAT TTCCAGAGTG
  GTTATACCAG CTTGCAATCC CACCAGCAAT GGAGAAGTGT TCCTCTTTCT CCACAACCTC
  TCCAACATGT GTTGTCACCT GAGGATTCTG TGTAAGGTGG AATCTCAGGG TTGCTTTGAT
  TTGCATTTCT CTGATCACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384649038	MGP_WTSI_11_108874766	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212087307					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384649038	MGP_WTSI_11_108874766	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108904278 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	1136 bp distal
Gm36876	predicted gene, 36876	within coordinates
Rr458739	regulatory region 458739	1089 bp proximal
Tssr105627	transcription start site region 105627	1697 bp downstream
Tssr105628	transcription start site region 105628	1626 bp downstream
Tssr105629	transcription start site region 105629	1593 bp downstream
Tssr105630	transcription start site region 105630	1546 bp downstream
Tssr105631	transcription start site region 105631	1458 bp downstream
Tssr111515	transcription start site region 111515	1720 bp upstream
Tssr111516	transcription start site region 111516	1670 bp upstream
Tssr111517	transcription start site region 111517	1599 bp upstream
Tssr111518	transcription start site region 111518	1581 bp upstream
Tssr111519	transcription start site region 111519	1570 bp upstream
Tssr111520	transcription start site region 111520	1512 bp upstream
Tssr111521	transcription start site region 111521	1452 bp upstream