rs212091451 SNP Detail

Summary

• ID
  rs212091451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31758486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGGCAA GTTGTAGCTG
  GGTCTGGTGG TAGCAATTAG GAGCCTGAGG CAGGAGGATT GTTCTGAGTG CAAGGCCAGC
  CAAGGTTGTA GAATGAGGCT TTCGGGGAGA GGAGTCAGTA TTAAAGCACT TGCCTTGCAT
  GTGCAAGGTC CTGGGTTCAA TCTCCATCAC TAACGTGGCC TGCCCCTCCC CCACCCCCTA
  Y
  CCCCCCACCC CCGAAAACAG CATGACAGCT CAAGCCTGAA GCTGAAGCAC TATTGCTATG
  AGTTAGAGGT CAGCCTGGGC TACTTAGTAA GGTCCAGGCA ATCCTTAGCT ACAGAGCTGG
  ACCCTATCTT GATAAAAACA AAACAAACCA GTGTGTAGAA GTTAGAGGGA ATGGTTGGGA
  CCCACTTGGG GTCCCATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325135618	CHEV_16_31939754	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212091451					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31758486 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317640	regulatory region 317640	1686 bp distal
Rr326503	regulatory region 326503	867 bp proximal
Tssr137933	transcription start site region 137933	1157 bp upstream