rs212098130 SNP Detail

Summary

• ID
  rs212098130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96139477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTATTT ATTTGTATGC
  GTATGTTTCC ATGGAGGCCA GAAGGAGGGT GTCAGCTCTC CTGGAGATGG AGTTACATGC
  AGTTGTGAGC TGCCCAATAT GAATGCTGGA AACTGAACTT GGGAACCAAA CTTGGTCCTT
  AGAAAGTGCA GCAAATGCTC CTATCTATCA CTGAGTCGGC CTGGCCCCCG TCCATTGAAT
  R
  TTAATAGATT GCCCAAGTAC AGTAAGTACC CTCACTGCTG TACTTTAAGG TATAAGAATG
  AAAAGATTCA GAGTTCTATA GGTTGTAGTT TCAATTTTTT AAAACATGTT TACAAGACAA
  GTTAACTCAT ACCCTGTATC ATATCATTGT TGGCACACGT CTGTATTTTA GTGTATTATG
  TGTTAGCAAA AGACAAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107353	CHEV_9_96157843	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212098130					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96139477 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1796 bp upstream
Tssr86589	transcription start site region 86589	1273 bp upstream
Tssr86590	transcription start site region 86590	1290 bp upstream
Tssr86591	transcription start site region 86591	1304 bp upstream
Tssr86592	transcription start site region 86592	1367 bp upstream
Tssr86593	transcription start site region 86593	1382 bp upstream
Tssr86594	transcription start site region 86594	1584 bp upstream
Tssr86595	transcription start site region 86595	1822 bp upstream
Tssr86596	transcription start site region 86596	1846 bp upstream