rs212109492 SNP Detail

Summary

• ID
  rs212109492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71247777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGCGAG ACTGAGAGAT
  GATAGAAAGG GATTGGTGAA GGCGAGTGGA AATGAAGGGT AGACAGACAT CTCCTGAAAC
  AGAACTGATC TTTAATCAGA ACTGAAGGGC TGCAGTCTCT CAGGGAAGTG AGACTATGCC
  CAAGTGGCAC GTGTTGGGGA GTAAGGGGTT GGGTTTTGTA GGACTGAAAG GGGGGGGGGG
  R
  GGCGGAGGGA GGGAGCTTTG GGGTTGGAAG ATTCCATTTG CAGGTCAGTT CCCCTGCAGT
  CAGGAAGTGG GAGAGGCTAG CGGGTCTGGT ATGTGGATCT CCTTATCAGA AGCTTCAGCA
  GTCAACAGTC AACTCTGGGC TTCTCAGTCC ATCTGAGGTT TTTAAGTGAT TACTTCAATC
  CATGCTTGGG ACCAGCCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss368722073	MGP_WTSI_6_71220787	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	G	A	G	A	A	G	G	G	G	A	A	G	A	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs212109492					SNP	A	A	G	A	G	A	G	A	A	G	G	G	G	A	A	G	A	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368722073	MGP_WTSI_6_71220787	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71247777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	609 bp proximal
Krcc1	lysine-rich coiled-coil 1	884 bp upstream
Mir8112	microRNA 8112	878 bp upstream
Rr136432	regulatory region 136432	1577 bp distal
Rr146429	regulatory region 146429	within coordinates
Rr379579	regulatory region 379579	893 bp downstream
Rr379580	regulatory region 379580	within coordinates
Tssr56988	transcription start site region 56988	81 bp upstream
Tssr56989	transcription start site region 56989	782 bp upstream
Tssr56990	transcription start site region 56990	879 bp upstream
Tssr61348	transcription start site region 61348	67 bp upstream
Tssr61349	transcription start site region 61349	45 bp upstream
Tssr61350	transcription start site region 61350	688 bp downstream