rs212110444 SNP Detail

Summary

• ID
  rs212110444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111505822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCCTGC CAGTCACAAC
  CCGTGTCAAA ATGGTGGCCT CCTGGGTTCC TGGAGTTGTG CTTTGTTACA TGGGGATGTC
  AGCTGTTTTC TCACAAGGAC TCGGGCTGTT AGAGCTCGGA GTGTTAGTTG TGTGAGGGAC
  TCGGGGACGG GAAGTTGTCC CGGGGAGGAG TGATGCTAAA CCTGTAGGGT TGTTGTGTGT
  Y
  TTCTCCTTTT CTCTTTCAGA GCTGTTGCGC AGCCATTGGT ACCTGTATTG GGGAAACATA
  GCATACAAGC AAGAAGCTTA CAGCCTCAGT GGCGAAAATT TTTTCATGTC AGAGACCGAG
  AACTCTTGCA GTCGTTTATG TCATCCCTTC TTCTCCAGAC AGAAGATACC AAAAAGTTGC
  AATCAAAGAT CTCTTCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387360290	MGP_WTSI_12_112777599	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212110444					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360290	MGP_WTSI_12_112777599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111505822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	17 bp distal
Eif5	eukaryotic translation initiation factor 5	within coordinates
Gm56546	predicted gene, 56546	1153 bp upstream
Gm58608	predicted gene, 58608	within coordinates
Gm60631	predicted gene, 60631	754 bp upstream
Rr403512	regulatory region 403512	1260 bp downstream
Rr473213	regulatory region 473213	596 bp distal
Rr473214	regulatory region 473214	636 bp distal
Rr473215	regulatory region 473215	within coordinates
Snora28	small nucleolar RNA, H/ACA box 28	1558 bp upstream
Tssr115320	transcription start site region 115320	1145 bp downstream
Tssr115321	transcription start site region 115321	1110 bp downstream
Tssr115322	transcription start site region 115322	1013 bp downstream
Tssr115323	transcription start site region 115323	906 bp downstream
Tssr115324	transcription start site region 115324	584 bp downstream
Tssr115325	transcription start site region 115325	514 bp downstream
Tssr115326	transcription start site region 115326	46 bp upstream
Tssr115327	transcription start site region 115327	825 bp upstream
Tssr117828	transcription start site region 117828	1432 bp upstream
Tssr117829	transcription start site region 117829	782 bp upstream