rs212114478 SNP Detail

Summary

• ID
  rs212114478
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75367942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACACAAAC GGTTTTCTTG
  TATGGCGATG GCTTGTTTTA ACTCTCAGCT GACTTAATTT GTCCATAATT ATGCAACTCC
  AAAATAAGAC AGGCTTTTTA ATACAATGAG ATGTTCCAGG ATGGCGGGGA ATCCCAGAGA
  ATAGGGAAAT AAGGACACCA GCTGTCCTCC GCCCCCCCCC CCACGCCCCA CCGCCCAAAA
  T
  AAGTCTTTGT TTTCAGGGCA ACCTCAAAAG TGCCTGGCAC AGTGCAGCTC CGCGGAATGC
  CCGGCAGGCA GGGAACCCTG GTGCGGTGCA GAAGAGCGGT TTACCCGCGA AAGGTAACTG
  CAGGCCAGCG CTCGCTCCTG ATTTGTCGGC TGGTAGCGCG TGCCCGCCCG CCACAAGTTT
  CCTTTTCTAG TTGGTGGGGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391575935	MGP_WTSI_14_75530309	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212114478					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575935	MGP_WTSI_14_75530309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75367942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	19 bp proximal
Cpgi6737	CpG island 6737	592 bp proximal
Gm62951	predicted gene, 62951	within coordinates
Lcp1	lymphocyte cytosolic protein 1	628 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	within coordinates
Tssr4477	transcription start site region 4477	125 bp downstream
Tssr126606	transcription start site region 126606	605 bp upstream
Tssr126607	transcription start site region 126607	724 bp upstream
Tssr126608	transcription start site region 126608	771 bp upstream
Tssr126609	transcription start site region 126609	1030 bp upstream
Tssr126610	transcription start site region 126610	1082 bp upstream
Tssr126611	transcription start site region 126611	1519 bp upstream
Tssr126612	transcription start site region 126612	1544 bp upstream
Tssr129761	transcription start site region 129761	84 bp downstream
Tssr129762	transcription start site region 129762	106 bp downstream
Tssr129763	transcription start site region 129763	142 bp downstream
Tssr129764	transcription start site region 129764	406 bp downstream
Tssr129765	transcription start site region 129765	503 bp downstream
Tssr129766	transcription start site region 129766	1073 bp downstream
Tssr129767	transcription start site region 129767	1115 bp downstream