rs212117588 SNP Detail

Summary

• ID
  rs212117588
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45949643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGGGGT TTGGGTTTTG
  GAATGTTGTT TGTTTGAGAC AAGGTTTCTT TATGTATCCT TGGCTGTCCA GGAACTAGGT
  CTGTAGACCA GGCTCCCTTT AACTCGGAGA TCTTCCTACC TCTGCCTCCT GAGTACTGGA
  ATTGAAGGCC TGCGCCACCA CTGCCTGGCT CCAGCTACCT TTTTTTAAAA TTTTTTTTTT
  K
  GGGGGGGGGC TTTTCGAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT GGAACTCACT
  TTGTAGACCA GGCTGGCCTC AAACTCAGAA ATCCGCCTGC CTCTGCCTCT CAAGTGCTGG
  GATTAAAGGC GTGTGCCACC ATGCCTGGCA GAACCTTTTT TTTTTTTTTT TAATTTAATT
  CTTCTCTGGG ACAGGATGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss383234437	MGP_WTSI_11_45872318	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	T	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs212117588					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	T	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383234437	MGP_WTSI_11_45872318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45949643 () rs orientation: forward

Symbol	Name	Function Class
Adam19	ADAM metallopeptidase domain 19	within coordinates
Cpgi2773	CpG island 2773	1515 bp distal
Gm72342	predicted gene, 72342	491 bp upstream
Rr445870	regulatory region 445870	1163 bp distal
Rr445871	regulatory region 445871	644 bp distal
Rr445872	regulatory region 445872	401 bp distal
Rr445873	regulatory region 445873	1303 bp proximal
Rr445874	regulatory region 445874	1730 bp proximal
Tssr107582	transcription start site region 107582	684 bp upstream
Tssr107583	transcription start site region 107583	621 bp upstream