rs212120286 SNP Detail

Summary

• ID
  rs212120286
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:19655355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAGAGG CAGAGGGATC
  AGGAATTGCC TTGTGAAGGA GAGCCTGTAC TATAACACAA TACCCTTGAG TTATACATGC
  TGAGATAGGT GTGTCCCTGA GACACTAAAT GGAAGGATGT TCACAACGGT GGAAAGTGGC
  AGAGAGTTGC AGAGTTTTGG GATTGCAGTT TATTACCTTG TGCAGGAATA AAAGCTACCC
  G
  CTCGCACAGC TATTTTTGAA GGCTGAACTT ATTCACAGGT AGTGCTGGTA AAATACCAGA
  AGCCATACAT AATGTCTGAC CTCAGCTGCT ACCTCATACA GCATATTTGT ACATAGGAGC
  CTTAAAAAGG TGGACTGGTC TACTGTCCTA TGGCAGCAGG AGACCACTTT TATTACCCAT
  GTTGGGCTTA TAATGTCCCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	ZALENDE/EiJ
ss385293422	MGP_WTSI_12_19611209	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	ZALENDE/EiJ
rs212120286					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385293422	MGP_WTSI_12_19611209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:19655355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4461	CpG island 4461	1060 bp proximal
Gm9257	predicted gene 9257	1575 bp upstream
Rr265223	regulatory region 265223	646 bp proximal