rs212124921 SNP Detail

Summary

• ID
  rs212124921
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62723936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGGAAA TCTACTGCTT
  CAGGTGGAAG GGAGAAAACT GGCTTGTGGC TTTACACTCC ACTCCCCCAA TTCCATACCT
  GAACTGTGGT ATATAAATGT CCCTCGATAG CCTAGCAGAT GCCTTTAATC CCAGGACTTG
  GGGGGCAGAG GCAAGTGGAT TTCTGAATTA TAGGCCAGTC TGGTTTACAA AGTGAGTTCT
  W
  GGACAGCCAG GGCTATACAG AGAAATCCTG TCTCAAAAAA ACAAAACAAA ATAAAACAAA
  TAAATGTCCC TAGATTGTTC GGAGAAATAG TCCCAAACTG TCAAGCTTAC ACCCTAAATA
  AATCCTTTAA ATGTATTCTT AACTAGGTAC CAGCTATAAC GGGTTTGTTT GTTTAGCTTT
  TAAAAGTCTC TGTGTAGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323332090	CHEV_10_62350905	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212124921					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62723936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	599 bp distal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	155 bp downstream
Tet1	tet methylcytosine dioxygenase 1	694 bp upstream
Tssr97890	transcription start site region 97890	717 bp upstream
Tssr97891	transcription start site region 97891	684 bp upstream