rs212126701 SNP Detail

Summary

• ID
  rs212126701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAGAGC TCCCTGGGAA
  GGAGAATTTG AAAGATATTC TGGGAAGGCC AGTGGGGGAA GGGAGCCATC AGTTAAAAAA
  CAAAGTGGAT ATTCAGAGCA GGTCAAGCCC GCCTGAGTAG GAGCCGTTTG GATGACAGGA
  GGGACCAGGA AGAAGTTAAA AGTCTAAGCC TACTAGAGAA TTTTCTAGAA GAATTAAAGA
  Y
  TTCTCTTCCA GTCATCCTTT GGAGTCACAG TTGGGGGAGA AGCAGGATGT ATCAGGAAGG
  ACGGAAAAGG CCACAGAACC AACTTGTACT GAGCTACAAA TGGCAGCTTT TCAGAGGGAG
  AGGGATCAGG GAGAGGAGAG GGCAGAACTG CTGGAGGAAC CAGAAGTCAA AGCCACCAAG
  ATACTGGCTA TGGTGACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787294	MGP_WTSI_11_69414030	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212126701					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787294	MGP_WTSI_11_69414030	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide			mRNA-UTR
				Noncoding-Transcript-Variant
Gm72066	predicted gene, 72066			within coordinates
Rr386229	regulatory region 386229			within coordinates
Rr450033	regulatory region 450033			789 bp distal
Rr450034	regulatory region 450034			918 bp distal
Rr450035	regulatory region 450035			within coordinates
Tssr3544	transcription start site region 3544			167 bp downstream
Tssr102487	transcription start site region 102487			488 bp downstream
Tssr102488	transcription start site region 102488			635 bp upstream
Tssr102489	transcription start site region 102489			710 bp upstream
Tssr108712	transcription start site region 108712			510 bp upstream
Tssr108713	transcription start site region 108713			359 bp upstream
Tssr108714	transcription start site region 108714			291 bp upstream
Tssr108715	transcription start site region 108715			257 bp upstream
Tssr108716	transcription start site region 108716			31 bp downstream
Tssr108717	transcription start site region 108717			56 bp downstream
Tssr108718	transcription start site region 108718			115 bp downstream
Tssr108719	transcription start site region 108719			126 bp downstream
Tssr108720	transcription start site region 108720			130 bp downstream
Tssr108721	transcription start site region 108721			144 bp downstream
Tssr108722	transcription start site region 108722			225 bp downstream
Tssr108723	transcription start site region 108723			253 bp downstream
Tssr108724	transcription start site region 108724			306 bp downstream
Tssr108725	transcription start site region 108725			330 bp downstream
Tssr108726	transcription start site region 108726			425 bp downstream
Tssr108727	transcription start site region 108727			447 bp downstream
Tssr108728	transcription start site region 108728			491 bp downstream
Tssr108729	transcription start site region 108729			578 bp downstream
Tssr108730	transcription start site region 108730			610 bp downstream
Tssr108731	transcription start site region 108731			641 bp downstream
Tssr108732	transcription start site region 108732			702 bp downstream
Tssr108733	transcription start site region 108733			1924 bp downstream