rs212127488 SNP Detail

Summary

• ID
  rs212127488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192342601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCATAAAC ATGAGCTGAT GTTTACAGAA
  AGAAAAACCA GCCAGTGATA GTTGCTTCCC TCACAGCCTT TCGTTTACAG TGACTCCTCA
  GCGACTATTA TTCCCTCCTA AGTTTTTGAC AGGCATCTCa attatttttt aatattattt
  W
  aaaaaatGAT GATCACTATG AAAAATTTAG AAAACATAGG AAAGTTTTCT tttttatttt
  gtatgtatat tttgcctgca tgcctgtatt atgtaaacaa tgtttgtgcc tggtgcccag
  agaggccaga agagggcact agatcttctg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320199405	CHEV_1_194484175	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212127488					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192342601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			122 bp proximal
Rr426373	regulatory region 426373			1271 bp proximal