rs212130832 SNP Detail

Summary

• ID
  rs212130832
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61677439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATTTTCC AGCTCAAAGG AGCTGTTTAC
  TTAAGAATTA AGGATGCAGA CGTTACTTGT TGATCAGAAC TTCTCCCCAT ACCTTGGGTT
  CAATTGTTCG AGGACAGGAA CCTGCGAAAT CATGACTCAA GGGTGTTCTT TTCGTCAACA
  R
  ATGCACAAAG GGAGTCCCCC TTCAAAAGGA AAAGTGTAAA CTTTTACACC CTATCATATT
  TGGATTTTGG GTGTGATCTT CGGTGGAACA CTTGGCACCT GCACAGTGGC CTTAAAGTTC
  CCTCAGCTTA GCTAGCTCTC TTGTGGCTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741948	CHEV_1_61684854	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212130832					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61677439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi308	CpG island 308	325 bp proximal
Pard3b	par-3 family cell polarity regulator beta	544 bp upstream
Rr29520	regulatory region 29520	within coordinates
Tssr95	transcription start site region 95	632 bp upstream
Tssr6971	transcription start site region 6971	539 bp upstream
Tssr6972	transcription start site region 6972	589 bp upstream
Tssr6973	transcription start site region 6973	662 bp upstream
Tssr6974	transcription start site region 6974	713 bp upstream