rs212147490 SNP Detail

Summary

• ID
  rs212147490
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42310913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGCTCCG TTGGGCCACA GTAGTGGGCG GCGAGCTCCT
  GCTGGTGAGG TAAGGAGTGG TGGGTGGCAA GGACTGTGAA TGCACGTGTC TCGTGTGTGT
  S
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGCGCG CGCGCGCGCG
  CGCGGTGCGC GTGCGTCCGC GAGGCGTGGG GGGCCAGAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323647641	CHEV_11_42233588	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212147490					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42310913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2743	CpG island 2743	1233 bp distal
Cpgi2744	CpG island 2744	within coordinates
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	319 bp distal
Rr445406	regulatory region 445406	774 bp proximal
Tssr100974	transcription start site region 100974	367 bp downstream
Tssr100975	transcription start site region 100975	301 bp downstream
Tssr100976	transcription start site region 100976	131 bp downstream
Tssr100977	transcription start site region 100977	351 bp upstream
Tssr100978	transcription start site region 100978	672 bp upstream
Tssr100979	transcription start site region 100979	743 bp upstream
Tssr100980	transcription start site region 100980	1147 bp upstream
Tssr100981	transcription start site region 100981	1172 bp upstream
Tssr100982	transcription start site region 100982	1199 bp upstream
Tssr100983	transcription start site region 100983	1236 bp upstream