rs212157596 SNP Detail

Summary

• ID
  rs212157596
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66211448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGAGCAT CCAGACATTT
  CCCATTCTTT TCTTCTGTAT TCAAAATGAC TTTTAACATG AAAGTTCTTA TTGAAATATT
  TTAAAATCAA TGTAAAATTC TTGTAATCTA TCCTTAGACA TCCATCCATT CATTCATTCC
  CACTCAGATA TAGGGGAGGG GGGCAGTTTT CAAAACCCTT AGTAGAAGCT GCAGTTGTGG
  M
  TAGCACCAGG CCCTGCAGAG ATTGTGCTTC TGTAATTTAT AAATTACAGA CAGTAAGGTA
  TGAGCAGCCA CAATAAAATA GAGCAATTAT AATGCTATAC CAGTTATACC ATACAGAAGG
  CTACGCAGAT GTGATTTCTC CCACACAAAA TATCTCAATT CCTCAGCTTC CACAATACTA
  TTTTTAGACT GGTTGACCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367388	MGP_WTSI_14_66592836	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212157596					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367388	MGP_WTSI_14_66592836	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66211448 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126263	transcription start site region 126263	672 bp downstream
Tssr126264	transcription start site region 126264	631 bp downstream
Tssr126265	transcription start site region 126265	603 bp downstream
Tssr126266	transcription start site region 126266	564 bp downstream
Tssr126267	transcription start site region 126267	254 bp upstream
Tssr126268	transcription start site region 126268	838 bp upstream
Tssr126269	transcription start site region 126269	924 bp upstream
Tssr126270	transcription start site region 126270	1583 bp upstream
Tssr126271	transcription start site region 126271	1601 bp upstream
Tssr126272	transcription start site region 126272	1626 bp upstream
Tssr126273	transcription start site region 126273	1653 bp upstream
Tssr126274	transcription start site region 126274	1697 bp upstream
Tssr126275	transcription start site region 126275	1706 bp upstream
Tssr126276	transcription start site region 126276	1739 bp upstream
Tssr126277	transcription start site region 126277	1804 bp upstream
Tssr126278	transcription start site region 126278	1840 bp upstream
Tssr129260	transcription start site region 129260	640 bp upstream
Tssr129261	transcription start site region 129261	601 bp upstream
Tssr129262	transcription start site region 129262	588 bp upstream
Tssr129263	transcription start site region 129263	572 bp upstream
Tssr129264	transcription start site region 129264	519 bp upstream
Tssr129265	transcription start site region 129265	862 bp downstream
Tssr129266	transcription start site region 129266	897 bp downstream
Tssr129267	transcription start site region 129267	929 bp downstream
Tssr129268	transcription start site region 129268	991 bp downstream
Tssr129269	transcription start site region 129269	1699 bp downstream
Tssr129270	transcription start site region 129270	1720 bp downstream
Tssr129271	transcription start site region 129271	1764 bp downstream