rs212165699 SNP Detail

Summary

• ID
  rs212165699
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95741045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATTTGA ATTTAGTAAT
  TTCTGTCTAA AAGTATATGA GATAAAGTGA TTTTGGAAAA CTGATAATAC AAATTTTGTC
  ATCACTGAAA TTCTGGAAGG CAGGGACCAA CACCTGAGGT TGTTCCCTGT CCTTAACTCA
  TGTACCGTGG CACAAGAACC TATATTCATA TGTACATACA TACATATATA TCTCACATGC
  A
  CATACAGACT TTTTAAAATG ATTAAAATTT TAAGTTTAAC AGCTATTAAT ATATTAAAAA
  CTTACATAAT TCAACAATAA AAAAGTTTGA TGAAAAAAAT GAATAAGGAA ATTGAGATTT
  TTCTCCAGAG AGAATATAAA ATAGCTAATA AGTAAAGGAA AACACAGATG TTTGATATGA
  TTAAAAGTAA GGGAGACAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104528	CHEV_9_95759411	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212165699					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95741045 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	1110 bp upstream
Atr	ataxia telangiectasia and Rad3 related	within coordinates
Cpgi22158	CpG island 22158	488 bp distal
Rr368834	regulatory region 368834	1281 bp downstream
Rr401608	regulatory region 401608	169 bp downstream
Tssr86577	transcription start site region 86577	1306 bp downstream
Tssr86578	transcription start site region 86578	1282 bp downstream
Tssr86579	transcription start site region 86579	1041 bp downstream
Tssr90940	transcription start site region 90940	1422 bp upstream
Tssr90941	transcription start site region 90941	1116 bp upstream
Tssr90942	transcription start site region 90942	1097 bp upstream