rs212168422 SNP Detail

Summary

• ID
  rs212168422
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGATAA GTATTTCATG
  GTAAAGAGAT GGTAAGTATT TCATGTGATA CTCTCAGGTA AATTTAAGAT TTCATTGTAT
  CCTGTTGATT CTTATTTATG TAAATGACAA CTTTAATAAC CAAATATGTC CTTCTGCAAG
  CCAGCCTAGC TACTATAGAA TAGGCATGTC ATTTCTAGTA GTCTTTAGTT GGTACTATAG
  W
  TCCTAGGCAA TGAGTGTCAA AAGGCACACA GTGAATATTA ATAATCCAGG TCAGATTAGG
  GAGAGCTCAT GGCAGTGAAT AAGATTGTGA GCTTCTAAAA TAAAGAGAGG TTGAAGAGGT
  GGTGATGACA TTTCAAATAA GAAACAAATG GCGATTAGAA CAAGAAGCTA TCCAGATACT
  TTCCTGCCCC TAATATCATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777331	MGP_WTSI_5_88125860	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212168422					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777331	MGP_WTSI_5_88125860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844694 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
Tssr46894	transcription start site region 46894	1970 bp downstream
Tssr46895	transcription start site region 46895	1950 bp downstream
Tssr46896	transcription start site region 46896	1871 bp downstream
Tssr51629	transcription start site region 51629	1911 bp upstream
Tssr51630	transcription start site region 51630	1863 bp upstream
Tssr51631	transcription start site region 51631	1824 bp upstream
Tssr51632	transcription start site region 51632	1565 bp upstream
Tssr51633	transcription start site region 51633	761 bp upstream
Tssr51634	transcription start site region 51634	656 bp upstream
Tssr51635	transcription start site region 51635	304 bp downstream
Tssr51636	transcription start site region 51636	330 bp downstream
Tssr51637	transcription start site region 51637	443 bp downstream
Tssr51638	transcription start site region 51638	1219 bp downstream
Tssr51639	transcription start site region 51639	1226 bp downstream