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rs212170102 SNP Detail
Summary
  • ID
    rs212170102
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:122343410 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGACAGCTGC TTCCTTTTTC
    GACAAAGGGC GTTGTCTTGA CTTAGCCCAA AGTTCAGTAT GTGCATGTAT TTGAGATGGT
    GTGCGCTGAT GGACACGCCT CCTTTTGTTA TAAAAGTGGT CAGGACCGCC TGGGACAACT
    ACTATATCAC CTATTTTTTT GTGATATAGT ATTTTTTAAC TTAATCTTTA CCACTCTTTG
    R
    GAGGGTGAGC ACCCTTGTCT TCTCTTCTAA CTTTCATTTC TCCAGTGATG AACCCATGCC
    CAGAGGCACA TCGCTAGATC ACAATGTTCC AAAGCCAGGA CGCTCAGCCA GTACAAATTA
    CCTTTGATGT TAAAGCTCTT TTTAGGTATG TCAGTAGTTC TTTCTGTAGG TGCTAGAGCC
    ATTGAAAATC TGGTTAGTTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss392814893 MGP_WTSI_14_122505220 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212170102 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss392814893 MGP_WTSI_14_122505220 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:122343410 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A330035P11Rik RIKEN cDNA A330035P11 gene within coordinates
Cpgi6887 CpG island 6887 498 bp distal
Cpgi6888 CpG island 6888 748 bp proximal
Gm56752 predicted gene, 56752 within coordinates
Rr296792 regulatory region 296792 within coordinates
Rr404313 regulatory region 404313 907 bp downstream
Tm9sf2 transmembrane 9 superfamily member 2 1040 bp upstream
Tssr127313 transcription start site region 127313 968 bp downstream
Tssr127314 transcription start site region 127314 855 bp downstream
Tssr127315 transcription start site region 127315 1031 bp upstream
Tssr127316 transcription start site region 127316 1067 bp upstream
Tssr127317 transcription start site region 127317 1078 bp upstream
Tssr127318 transcription start site region 127318 1121 bp upstream
Tssr130316 transcription start site region 130316 157 bp upstream
Tssr130317 transcription start site region 130317 918 bp downstream
Tssr130318 transcription start site region 130318 942 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory