rs212170390 SNP Detail

Summary

• ID
  rs212170390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAATGGCA CACACTTTTT
  AATCCCAGCA CTTGAATCTG TAATTTTCCA GGCCAACCAT AACTAAACTG TGAGTTCATG
  TGTCAACATC CTAAAACTGG AAGATAAATC TCTAAGAGTT GATTTTCACA TAGCCTTATA
  AATACCTCTA TTAGAAAAAT CACTTAGGTT GCCTCATCCA TCTTTCATTT TCAAAAGCAC
  R
  TTTTCTATAT ATGCATAGCA TTGGAGAAAG ATTCATTTTA ATATTTCTCA GTAGAACACA
  ATTTAAATGA AACTCTAACT TCAATCTTAT CTTGAATTCT TAGAAGCATT AAACACTAAT
  AGCATGAAGA GGTAACATTT CTGATTAGTC CTGACCACAT ATAGCTTTTC CTCTAAGAAA
  AGAATTTCTT AATTTGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044828	CHEV_6_142420552	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212170390					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417758 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	766 bp downstream
Tssr63951	transcription start site region 63951	781 bp downstream
Tssr63952	transcription start site region 63952	812 bp downstream
Tssr63953	transcription start site region 63953	865 bp downstream
Tssr63954	transcription start site region 63954	928 bp downstream
Tssr63955	transcription start site region 63955	957 bp downstream
Tssr63956	transcription start site region 63956	1043 bp downstream