rs212171480 SNP Detail

Summary

• ID
  rs212171480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21693665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCCTT GGTGTTCCCA
  GAGCTAGAGA TGGATGGTGT AGCTGACATT TTTAGAATTA GAACCATATA CTTTACTTGT
  TTTCTATATC TAGGAAAGCC ATGAGTTTCT GAATCTACCA AAATTCTGTT GGATTAGAAA
  AGCACCTTGT GCATGAGTCA CAGAGCACTA ACTCCAAAAT GACCCCTGAG AAACTAAGAA
  R
  CCGAATTGGA GGTCCAGAGA CCTCCTATTT AGACAGAGAA TAAGGTCCCA AGGTGAGACA
  GCTGCTGGGA ATTACTGGTC CTACGACATT CTTTTCTGCC TAAAGGACAT GGTGTTGCCT
  AGCAACTTTC CTTTTCCTGC ATACTTTCCT GCAGGGAGCT ACTTGCCCTA CTACATTCTC
  TCCTGCATAT TTTCCCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397810187	MGP_WTSI_17_21610367	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212171480					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397810187	MGP_WTSI_17_21610367	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21693665 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	414 bp upstream
Gm56906	predicted gene, 56906	1344 bp upstream
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	187 bp distal
Rr522959	regulatory region 522959	within coordinates
Rr522960	regulatory region 522960	280 bp proximal
Rr522961	regulatory region 522961	1254 bp proximal
Rr522962	regulatory region 522962	1355 bp proximal
Tssr142877	transcription start site region 142877	440 bp upstream
Tssr142878	transcription start site region 142878	846 bp upstream
Tssr142879	transcription start site region 142879	1504 bp upstream
Tssr146591	transcription start site region 146591	1794 bp upstream