rs212171519 SNP Detail

Summary

• ID
  rs212171519
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93354611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGCCAGG GACTGGAGGA
  AGAGCAGCTG AGGCGCCAGG AACGTGACAG AAAATTCCGT GAGGAACAAG AGCTCGGCCA
  AGAACTGGAG GAAGAGCGGC TGCGGGACAG AAAGATCCGC CGGGAGCAAG AGCTCCGCCG
  GGAACGCGAG CAAGAGCAGC GGCGCCGCCT GGAGCGTGAG GAAGAGCAGC AGCGTCTCCA
  T
  GAGCGTGAGG AAGAGCAGCG GCGCCGCCAG GAGCGCGAGC AAGAGCAGCA GCGGTGCCTG
  GAGCGTGAGG AGGAACAATT TCGCTTTGAG GAGCAGCAGC GCCGCCGCCA GGAACGCGAG
  CAACAGTTGA GACAGGAGCG CGACAGAAGA GTCCTTGAGG AAGAAGAGCT TCGTCAGGAA
  AGGGAGGAGC TGCTGCACCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss358876348	MGP_WTSI_3_93251226	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs212171519					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358876348	MGP_WTSI_3_93251226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93354611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	within coordinates
Gm37245	predicted gene, 37245	within coordinates
Gm66249	predicted gene, 66249	within coordinates
Rr580539	regulatory region 580539	549 bp proximal
Tchh	trichohyalin	within coordinates
Tssr30390	transcription start site region 30390	1984 bp downstream
Tssr30391	transcription start site region 30391	1974 bp downstream
Tssr30392	transcription start site region 30392	1956 bp downstream
Tssr30393	transcription start site region 30393	1945 bp downstream
Tssr30394	transcription start site region 30394	1919 bp downstream
Tssr30395	transcription start site region 30395	1892 bp downstream
Tssr30396	transcription start site region 30396	1842 bp downstream
Tssr30397	transcription start site region 30397	1826 bp downstream
Tssr30398	transcription start site region 30398	1748 bp downstream
Tssr30399	transcription start site region 30399	1669 bp downstream
Tssr30400	transcription start site region 30400	1220 bp downstream
Tssr30401	transcription start site region 30401	1199 bp downstream
Tssr30402	transcription start site region 30402	1099 bp downstream
Tssr30403	transcription start site region 30403	1062 bp downstream
Tssr30404	transcription start site region 30404	69 bp upstream
Tssr30405	transcription start site region 30405	180 bp upstream
Tssr30406	transcription start site region 30406	328 bp upstream
Tssr30407	transcription start site region 30407	523 bp upstream
Tssr34367	transcription start site region 34367	1972 bp upstream
Tssr34368	transcription start site region 34368	1942 bp upstream
Tssr34369	transcription start site region 34369	1916 bp upstream
Tssr34370	transcription start site region 34370	1890 bp upstream
Tssr34371	transcription start site region 34371	1747 bp upstream
Tssr34372	transcription start site region 34372	1086 bp upstream
Tssr34373	transcription start site region 34373	72 bp downstream