rs212176429 SNP Detail

Summary

• ID
  rs212176429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45342875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCCGGG ACTGAGGGGT
  TGGCAAAAAG CAGGCATTTT CGATGGTTAG CAATCTGGGC ACCAAATCGA CACTTGGGCA
  GCGCGGGCAG TTGAGCTTCT AGGCTGTGGT AGAGGACGTG CCCCCGGGCG CGCAGATGGC
  AGGAGGGAGA GGAGGCGGCC GAACTCCGCG CCCTTGCGCT GTAGAGCACA GACGCTTCTC
  R
  GCTTTACCTG CTCAAGCCTC TAACTTTTCT CCTTCGCGCC CAGAGGGCAG CTTCTCCTTT
  CGCCCCCTTT GCATGGGTTG GCCTGGTCCA ATAATAATTC TTGCCCCTCT AGGCAATGGA
  GAAGGACAGC CAAGAGCCCG GGGGAGGGGT CTAGTCCTCT GCTAATGCCT GGAGATGTAC
  GGAGTTTGTA ACCTGCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377433646	MGP_WTSI_9_45239660	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212176429					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377433646	MGP_WTSI_9_45239660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45342875 () rs orientation: forward

Symbol	Name	Function Class
4833428L15Rik	RIKEN cDNA 4833428L15 gene	345 bp upstream
Cpgi21692	CpG island 21692	within coordinates
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr383299	regulatory region 383299	within coordinates
Rr677921	regulatory region 677921	1274 bp distal
Rr677922	regulatory region 677922	within coordinates
Rr677923	regulatory region 677923	493 bp proximal
Tssr84800	transcription start site region 84800	1198 bp downstream
Tssr84801	transcription start site region 84801	238 bp downstream
Tssr84802	transcription start site region 84802	211 bp downstream