rs212182209 SNP Detail

Summary

• ID
  rs212182209
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71247767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTTCAG CCCTTGCGAG
  ACTGAGAGAT GATAGAAAGG GATTGGTGAA GGCGAGTGGA AATGAAGGGT AGACAGACAT
  CTCCTGAAAC AGAACTGATC TTTAATCAGA ACTGAAGGGC TGCAGTCTCT CAGGGAAGTG
  AGACTATGCC CAAGTGGCAC GTGTTGGGGA GTAAGGGGTT GGGTTTTGTA GGACTGAAAG
  T
  GGGGGGGGGA GGCGGAGGGA GGGAGCTTTG GGGTTGGAAG ATTCCATTTG CAGGTCAGTT
  CCCCTGCAGT CAGGAAGTGG GAGAGGCTAG CGGGTCTGGT ATGTGGATCT CCTTATCAGA
  AGCTTCAGCA GTCAACAGTC AACTCTGGGC TTCTCAGTCC ATCTGAGGTT TTTAAGTGAT
  TACTTCAATC CATGCTTGGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321817326	CHEV_6_71220777	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212182209					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71247767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	619 bp proximal
Krcc1	lysine-rich coiled-coil 1	894 bp upstream
Mir8112	microRNA 8112	888 bp upstream
Rr136432	regulatory region 136432	1567 bp distal
Rr146429	regulatory region 146429	within coordinates
Rr379579	regulatory region 379579	883 bp downstream
Rr379580	regulatory region 379580	within coordinates
Tssr56988	transcription start site region 56988	91 bp upstream
Tssr56989	transcription start site region 56989	792 bp upstream
Tssr56990	transcription start site region 56990	889 bp upstream
Tssr61348	transcription start site region 61348	57 bp upstream
Tssr61349	transcription start site region 61349	35 bp upstream
Tssr61350	transcription start site region 61350	698 bp downstream